SMTL ID : 1hpu.3 (3 other biounits)

5'-NUCLEOTIDASE (CLOSED FORM), COMPLEX WITH AMPCP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 6 residues within 4Å: Chain A: D.59, N.91, H.192, H.227 Ligands: MN.2, A12.3 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.59, A:H.192, A:H.227, H2O.3 MN.2: 6 residues within 4Å: Chain A: D.16, H.18, D.59, Q.229 Ligands: MN.1, A12.3 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.16, A:H.18, A:D.59, H2O.3, H2O.11

1 x A12: PHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER(Non-covalent)

A12.3: 20 residues within 4Å: Chain A: D.59, N.91, H.92, I.153, G.154, N.155, H.227, R.350, R.354, S.380, G.382, G.383, R.385, F.404, N.406, G.433, F.473, D.479 Ligands: MN.1, MN.2 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:H.92, A:R.350, A:R.354, A:R.354, A:S.380, A:R.385, A:R.385, A:N.406, A:D.479 Water bridges: A:H.92, A:D.95, A:N.155, A:N.155, A:Q.229, A:Q.229, A:F.404, A:G.433, A:D.479 pi-Stacking: A:F.404, A:F.404, A:F.473

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Knofel, T. et al., Mechanism of hydrolysis of phosphate esters by the dimetal center of 5'-nucleotidase based on crystal structures. J.Mol.Biol. (2001)

Release Date

2002-03-20

Peptides

5'-NUCLEOTIDASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

5'-NUCLEOTIDASE

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