SMTL ID : 1i32.1 (1 other biounit)

LEISHMANIA MEXICANA GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE IN COMPLEX WITH INHIBITORS

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-tetramer

Ligands

4 x NMD: N-NAPHTHALEN-1-YLMETHYL-2'-[3,5-DIMETHOXYBENZAMIDO]-2'-DEOXY-ADENOSINE(Non-covalent)

NMD.1: 15 residues within 4Å: Chain A: N.8, G.9, G.11, V.37, D.38, M.39, S.40, Y.45, A.90, Q.91, R.92, T.111, L.113 Chain B: V.206, L.208 9 PLIP interactions: 8 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:M.39, A:R.92, A:L.113, B:L.208 Hydrogen bonds: A:D.38, A:Q.91, A:T.111 Water bridges: A:Q.91, A:Q.91 NMD.2: 16 residues within 4Å: Chain A: V.206, L.208 Chain B: N.8, G.9, F.10, G.11, V.37, D.38, M.39, S.40, Y.45, A.90, Q.91, R.92, T.111, L.113 8 PLIP interactions: 7 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:M.39, B:R.92, A:L.208 Hydrogen bonds: B:D.38, B:Q.91 Water bridges: B:N.8, B:R.12, B:Q.91 NMD.3: 17 residues within 4Å: Chain C: N.8, G.9, F.10, G.11, V.37, D.38, M.39, S.40, F.46, A.90, Q.91, R.92, S.110, T.111, L.113 Chain D: V.206, L.208 13 PLIP interactions: 11 interactions with chain C, 2 interactions with chain D Hydrophobic interactions: C:M.39, C:R.92, D:V.206, D:L.208 Hydrogen bonds: C:F.10, C:F.10, C:D.38, C:Q.91, C:T.111 Water bridges: C:N.8, C:N.8, C:G.11, C:Q.91 NMD.4: 14 residues within 4Å: Chain C: V.206, L.208 Chain D: N.8, G.9, G.11, V.37, D.38, M.39, S.40, A.90, Q.91, R.92, T.111, L.113 9 PLIP interactions: 7 interactions with chain D, 2 interactions with chain C Hydrophobic interactions: D:M.39, D:R.92, D:L.113, C:V.206, C:L.208 Hydrogen bonds: D:D.38, D:Q.91, D:T.111 Water bridges: D:N.8

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Suresh, S. et al., Conformational changes in Leishmania mexicana glyceraldehyde-3-phosphate dehydrogenase induced by designed inhibitors. J.Mol.Biol. (2001)

Release Date

2001-10-03

Peptides

GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE

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