SMTL ID : 1i33.1 (1 other biounit)

LEISHMANIA MEXICANA GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE IN COMPLEX WITH INHIBITORS

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-tetramer

Ligands

4 x TND: N-1,2,3,4-TETRAHYDRONAPHTH-1-YL-2'-[3,5-DIMETHOXYBENZAMIDO]-2'-DEOXY-ADENOSINE(Non-covalent)

TND.1: 15 residues within 4Å: Chain A: N.8, G.9, F.10, G.11, V.37, D.38, M.39, S.40, A.90, Q.91, R.92, T.111, L.113 Chain B: V.206, L.208 8 PLIP interactions: 2 interactions with chain B, 6 interactions with chain A Hydrophobic interactions: B:V.206, B:L.208, A:M.39, A:A.90, A:R.92, A:L.113 Hydrogen bonds: A:D.38, A:Q.91 TND.2: 14 residues within 4Å: Chain A: V.206, L.208 Chain B: N.8, G.9, F.10, G.11, D.38, M.39, S.40, A.90, Q.91, R.92, T.111, L.113 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:M.39, B:R.92, B:L.113, A:L.208 Hydrogen bonds: B:D.38, B:Q.91 TND.3: 16 residues within 4Å: Chain C: N.8, G.9, F.10, G.11, V.37, D.38, M.39, S.40, F.46, A.90, Q.91, R.92, T.111, L.113 Chain D: V.206, L.208 10 PLIP interactions: 2 interactions with chain D, 8 interactions with chain C Hydrophobic interactions: D:V.206, D:L.208, C:M.39, C:A.90, C:R.92, C:L.113 Hydrogen bonds: C:F.10, C:D.38, C:S.40, C:Q.91 TND.4: 15 residues within 4Å: Chain C: V.206, L.208 Chain D: N.8, G.9, F.10, G.11, D.38, M.39, S.40, F.46, A.90, Q.91, R.92, T.111, L.113 7 PLIP interactions: 1 interactions with chain C, 6 interactions with chain D Hydrophobic interactions: C:L.208, D:M.39, D:R.92, D:L.113 Hydrogen bonds: D:F.10, D:D.38, D:Q.91

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Suresh, S. et al., Conformational changes in Leishmania mexicana glyceraldehyde-3-phosphate dehydrogenase induced by designed inhibitors. J.Mol.Biol. (2001)

Release Date

2001-10-03

Peptides

GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE

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