- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.15 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x MG: MAGNESIUM ION(Non-covalent)
- 32 x CD: CADMIUM ION(Non-covalent)
CD.3: 1 residues within 4Å:- Chain A: H.585
Ligand excluded by PLIPCD.4: 1 residues within 4Å:- Chain A: D.321
Ligand excluded by PLIPCD.5: 3 residues within 4Å:- Chain A: H.584, H.586
- Chain C: E.326
Ligand excluded by PLIPCD.6: 1 residues within 4Å:- Chain A: H.397
Ligand excluded by PLIPCD.7: 5 residues within 4Å:- Chain A: D.386, H.388
- Chain B: D.386, H.388
- Ligands: CD.24
Ligand excluded by PLIPCD.11: 6 residues within 4Å:- Chain A: C.113, C.172, S.420, C.422
- Ligands: CL.8, CD.12
Ligand excluded by PLIPCD.12: 6 residues within 4Å:- Chain A: G.111, C.172, H.453
- Ligands: CL.8, CL.9, CD.11
Ligand excluded by PLIPCD.13: 5 residues within 4Å:- Chain A: C.113, H.148, L.152, S.420
- Ligands: CL.10
Ligand excluded by PLIPCD.20: 1 residues within 4Å:- Chain B: H.585
Ligand excluded by PLIPCD.21: 1 residues within 4Å:- Chain B: D.321
Ligand excluded by PLIPCD.22: 3 residues within 4Å:- Chain B: H.584, H.586
- Chain D: E.326
Ligand excluded by PLIPCD.23: 1 residues within 4Å:- Chain B: H.397
Ligand excluded by PLIPCD.24: 5 residues within 4Å:- Chain A: D.386, H.388
- Chain B: D.386, H.388
- Ligands: CD.7
Ligand excluded by PLIPCD.28: 6 residues within 4Å:- Chain B: C.113, C.172, S.420, C.422
- Ligands: CL.25, CD.29
Ligand excluded by PLIPCD.29: 6 residues within 4Å:- Chain B: G.111, C.172, H.453
- Ligands: CL.25, CL.26, CD.28
Ligand excluded by PLIPCD.30: 5 residues within 4Å:- Chain B: C.113, H.148, L.152, S.420
- Ligands: CL.27
Ligand excluded by PLIPCD.37: 1 residues within 4Å:- Chain C: H.585
Ligand excluded by PLIPCD.38: 1 residues within 4Å:- Chain C: D.321
Ligand excluded by PLIPCD.39: 3 residues within 4Å:- Chain A: E.326
- Chain C: H.584, H.586
Ligand excluded by PLIPCD.40: 1 residues within 4Å:- Chain C: H.397
Ligand excluded by PLIPCD.41: 5 residues within 4Å:- Chain C: D.386, H.388
- Chain D: D.386, H.388
- Ligands: CD.58
Ligand excluded by PLIPCD.45: 6 residues within 4Å:- Chain C: C.113, C.172, S.420, C.422
- Ligands: CL.42, CD.46
Ligand excluded by PLIPCD.46: 6 residues within 4Å:- Chain C: G.111, C.172, H.453
- Ligands: CL.42, CL.43, CD.45
Ligand excluded by PLIPCD.47: 5 residues within 4Å:- Chain C: C.113, H.148, L.152, S.420
- Ligands: CL.44
Ligand excluded by PLIPCD.54: 1 residues within 4Å:- Chain D: H.585
Ligand excluded by PLIPCD.55: 1 residues within 4Å:- Chain D: D.321
Ligand excluded by PLIPCD.56: 3 residues within 4Å:- Chain B: E.326
- Chain D: H.584, H.586
Ligand excluded by PLIPCD.57: 1 residues within 4Å:- Chain D: H.397
Ligand excluded by PLIPCD.58: 5 residues within 4Å:- Chain C: D.386, H.388
- Chain D: D.386, H.388
- Ligands: CD.41
Ligand excluded by PLIPCD.62: 6 residues within 4Å:- Chain D: C.113, C.172, S.420, C.422
- Ligands: CL.59, CD.63
Ligand excluded by PLIPCD.63: 6 residues within 4Å:- Chain D: G.111, C.172, H.453
- Ligands: CL.59, CL.60, CD.62
Ligand excluded by PLIPCD.64: 5 residues within 4Å:- Chain D: C.113, H.148, L.152, S.420
- Ligands: CL.61
Ligand excluded by PLIP- 12 x CL: CHLORIDE ION(Non-functional Binders)
CL.8: 8 residues within 4Å:- Chain A: G.111, A.112, C.113, C.172, H.453
- Ligands: CL.9, CD.11, CD.12
Ligand excluded by PLIPCL.9: 7 residues within 4Å:- Chain A: Q.108, G.111, C.113, T.114, H.453
- Ligands: CL.8, CD.12
Ligand excluded by PLIPCL.10: 5 residues within 4Å:- Chain A: C.113, I.117, H.148, L.152
- Ligands: CD.13
Ligand excluded by PLIPCL.25: 8 residues within 4Å:- Chain B: G.111, A.112, C.113, C.172, H.453
- Ligands: CL.26, CD.28, CD.29
Ligand excluded by PLIPCL.26: 7 residues within 4Å:- Chain B: Q.108, G.111, C.113, T.114, H.453
- Ligands: CL.25, CD.29
Ligand excluded by PLIPCL.27: 5 residues within 4Å:- Chain B: C.113, I.117, H.148, L.152
- Ligands: CD.30
Ligand excluded by PLIPCL.42: 8 residues within 4Å:- Chain C: G.111, A.112, C.113, C.172, H.453
- Ligands: CL.43, CD.45, CD.46
Ligand excluded by PLIPCL.43: 7 residues within 4Å:- Chain C: Q.108, G.111, C.113, T.114, H.453
- Ligands: CL.42, CD.46
Ligand excluded by PLIPCL.44: 5 residues within 4Å:- Chain C: C.113, I.117, H.148, L.152
- Ligands: CD.47
Ligand excluded by PLIPCL.59: 8 residues within 4Å:- Chain D: G.111, A.112, C.113, C.172, H.453
- Ligands: CL.60, CD.62, CD.63
Ligand excluded by PLIPCL.60: 7 residues within 4Å:- Chain D: Q.108, G.111, C.113, T.114, H.453
- Ligands: CL.59, CD.63
Ligand excluded by PLIPCL.61: 5 residues within 4Å:- Chain D: C.113, I.117, H.148, L.152
- Ligands: CD.64
Ligand excluded by PLIP- 8 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.14: 20 residues within 4Å:- Chain A: K.16, G.18, V.19, G.20, K.21, T.22, S.23, D.45, N.235, G.236, F.276, L.277, Q.278, N.281, M.282, T.501, T.502, R.543
- Ligands: MG.1, TAS.17
24 PLIP interactions:24 interactions with chain A- Hydrogen bonds: A:K.16, A:G.18, A:V.19, A:G.20, A:G.20, A:K.21, A:T.22, A:S.23, A:S.23, A:N.235, A:G.236, A:F.276, A:Q.278, A:M.282, A:M.282, A:T.501, A:T.502, A:R.543
- Water bridges: A:T.22, A:T.22, A:N.281, A:T.501
- Salt bridges: A:K.21
- pi-Cation interactions: A:R.206
ADP.15: 22 residues within 4Å:- Chain A: Q.208, S.210, R.255, K.335, G.337, V.338, G.339, K.340, T.341, T.342, N.527, N.528, P.566, V.567, L.568, A.569, S.570, E.571, P.572, L.581
- Ligands: MG.2, AF3.16
22 PLIP interactions:22 interactions with chain A- Hydrogen bonds: A:Q.208, A:R.255, A:K.335, A:G.337, A:V.338, A:G.339, A:G.339, A:K.340, A:T.341, A:T.341, A:T.342, A:T.342, A:N.527, A:N.527, A:N.528, A:L.568
- Water bridges: A:S.210, A:S.210, A:T.342, A:D.364, A:D.364
- Salt bridges: A:K.340
ADP.31: 20 residues within 4Å:- Chain B: K.16, G.18, V.19, G.20, K.21, T.22, S.23, D.45, N.235, G.236, F.276, L.277, Q.278, N.281, M.282, T.501, T.502, R.543
- Ligands: MG.18, TAS.34
24 PLIP interactions:24 interactions with chain B- Hydrogen bonds: B:K.16, B:G.18, B:V.19, B:G.20, B:G.20, B:K.21, B:T.22, B:S.23, B:S.23, B:N.235, B:G.236, B:F.276, B:Q.278, B:M.282, B:M.282, B:T.501, B:T.502, B:R.543
- Water bridges: B:T.22, B:T.22, B:N.281, B:T.501
- Salt bridges: B:K.21
- pi-Cation interactions: B:R.206
ADP.32: 22 residues within 4Å:- Chain B: Q.208, S.210, R.255, K.335, G.337, V.338, G.339, K.340, T.341, T.342, N.527, N.528, P.566, V.567, L.568, A.569, S.570, E.571, P.572, L.581
- Ligands: MG.19, AF3.33
23 PLIP interactions:23 interactions with chain B- Hydrogen bonds: B:Q.208, B:R.255, B:K.335, B:G.337, B:V.338, B:G.339, B:G.339, B:K.340, B:T.341, B:T.341, B:T.342, B:T.342, B:N.527, B:N.527, B:N.528, B:L.568
- Water bridges: B:S.210, B:S.210, B:T.341, B:T.342, B:D.364, B:D.364
- Salt bridges: B:K.340
ADP.48: 20 residues within 4Å:- Chain C: K.16, G.18, V.19, G.20, K.21, T.22, S.23, D.45, N.235, G.236, F.276, L.277, Q.278, N.281, M.282, T.501, T.502, R.543
- Ligands: MG.35, TAS.51
23 PLIP interactions:23 interactions with chain C- Hydrogen bonds: C:K.16, C:G.18, C:V.19, C:G.20, C:G.20, C:K.21, C:T.22, C:T.22, C:S.23, C:S.23, C:N.235, C:G.236, C:F.276, C:Q.278, C:M.282, C:M.282, C:T.501, C:T.501, C:R.543
- Water bridges: C:N.281, C:T.501
- Salt bridges: C:K.21
- pi-Cation interactions: C:R.206
ADP.49: 22 residues within 4Å:- Chain C: Q.208, S.210, R.255, K.335, G.337, V.338, G.339, K.340, T.341, T.342, N.527, N.528, P.566, V.567, L.568, A.569, S.570, E.571, P.572, L.581
- Ligands: MG.36, AF3.50
20 PLIP interactions:20 interactions with chain C- Hydrogen bonds: C:Q.208, C:R.255, C:K.335, C:G.337, C:V.338, C:G.339, C:G.339, C:K.340, C:T.341, C:T.342, C:T.342, C:N.527, C:N.527, C:N.528, C:L.568
- Water bridges: C:S.210, C:S.210, C:T.341, C:T.342
- Salt bridges: C:K.340
ADP.65: 20 residues within 4Å:- Chain D: K.16, G.18, V.19, G.20, K.21, T.22, S.23, D.45, N.235, G.236, F.276, L.277, Q.278, N.281, M.282, T.501, T.502, R.543
- Ligands: MG.52, TAS.68
24 PLIP interactions:24 interactions with chain D- Hydrogen bonds: D:K.16, D:G.18, D:V.19, D:G.20, D:G.20, D:K.21, D:T.22, D:T.22, D:S.23, D:S.23, D:D.45, D:N.235, D:G.236, D:F.276, D:Q.278, D:M.282, D:M.282, D:T.501, D:T.501, D:R.543
- Water bridges: D:N.281, D:T.501
- Salt bridges: D:K.21
- pi-Cation interactions: D:R.206
ADP.66: 22 residues within 4Å:- Chain D: Q.208, S.210, R.255, K.335, G.337, V.338, G.339, K.340, T.341, T.342, N.527, N.528, P.566, V.567, L.568, A.569, S.570, E.571, P.572, L.581
- Ligands: MG.53, AF3.67
21 PLIP interactions:21 interactions with chain D- Hydrogen bonds: D:Q.208, D:R.255, D:K.335, D:G.337, D:V.338, D:G.339, D:G.339, D:K.340, D:T.341, D:T.342, D:T.342, D:N.527, D:N.527, D:N.528, D:L.568
- Water bridges: D:S.210, D:S.210, D:T.341, D:T.341, D:T.342
- Salt bridges: D:K.340
- 4 x AF3: ALUMINUM FLUORIDE(Non-covalent)
AF3.16: 5 residues within 4Å:- Chain A: G.336, G.337, K.340
- Ligands: MG.2, ADP.15
No protein-ligand interaction detected (PLIP)AF3.33: 5 residues within 4Å:- Chain B: G.336, G.337, K.340
- Ligands: MG.19, ADP.32
No protein-ligand interaction detected (PLIP)AF3.50: 5 residues within 4Å:- Chain C: G.336, G.337, K.340
- Ligands: MG.36, ADP.49
No protein-ligand interaction detected (PLIP)AF3.67: 5 residues within 4Å:- Chain D: G.336, G.337, K.340
- Ligands: MG.53, ADP.66
No protein-ligand interaction detected (PLIP)- 4 x TAS: TRIHYDROXYARSENITE(III)(Non-covalent)
TAS.17: 6 residues within 4Å:- Chain A: G.18, R.206, L.277, E.500, R.543
- Ligands: ADP.14
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.206, A:R.206, A:R.543
- Water bridges: A:N.281
TAS.34: 6 residues within 4Å:- Chain B: G.18, R.206, L.277, E.500, R.543
- Ligands: ADP.31
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:R.206, B:R.206, B:R.543
- Water bridges: B:N.281
TAS.51: 6 residues within 4Å:- Chain C: G.18, R.206, L.277, E.500, R.543
- Ligands: ADP.48
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:R.206, C:R.206, C:R.543
- Water bridges: C:N.281, C:E.500
TAS.68: 6 residues within 4Å:- Chain D: G.18, R.206, L.277, E.500, R.543
- Ligands: ADP.65
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:R.206, D:R.206, D:R.543
- Water bridges: D:N.281, D:E.500
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhou, T. et al., Conformational changes in four regions of the Escherichia coli ArsA ATPase link ATP hydrolysis to ion translocation. J.Biol.Chem. (2001)
- Release Date
- 2001-09-12
- Peptides
- ARSENICAL PUMP-DRIVING ATPASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.15 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x MG: MAGNESIUM ION(Non-covalent)
- 32 x CD: CADMIUM ION(Non-covalent)
- 12 x CL: CHLORIDE ION(Non-functional Binders)
- 8 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 4 x AF3: ALUMINUM FLUORIDE(Non-covalent)
- 4 x TAS: TRIHYDROXYARSENITE(III)(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhou, T. et al., Conformational changes in four regions of the Escherichia coli ArsA ATPase link ATP hydrolysis to ion translocation. J.Biol.Chem. (2001)
- Release Date
- 2001-09-12
- Peptides
- ARSENICAL PUMP-DRIVING ATPASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A