SMTL ID : 1il2.2 (1 other biounit)

Crystal Structure of the E. coli Aspartyl-tRNA Synthetase:Yeast tRNAasp:aspartyl-Adenylate Complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain B: R.222, R.225, E.482, R.537 6 PLIP interactions: 6 interactions with chain B Water bridges: B:R.222, B:R.225, B:E.482 Salt bridges: B:R.222, B:R.225, B:R.537

1 x AMO: ASPARTYL-ADENOSINE-5'-MONOPHOSPHATE(Non-covalent)

AMO.2: 26 residues within 4Å: Chain B: E.171, S.193, Q.195, K.198, R.217, E.219, D.224, R.225, Q.226, F.229, Q.231, H.448, H.449, E.482, V.483, G.484, G.485, G.486, R.489, G.530, L.531, A.532, F.533, G.534, R.537, I.548 28 PLIP interactions: 28 interactions with chain B Hydrophobic interactions: B:A.532 Hydrogen bonds: B:S.193, B:S.193, B:Q.195, B:E.219, B:Q.226, B:Q.231, B:G.484, B:G.534, B:R.537, B:R.537 Water bridges: B:K.198, B:R.217, B:R.217, B:H.448, B:E.482, B:D.536 Salt bridges: B:K.198, B:R.217, B:R.217, B:H.448, B:H.448, B:H.448, B:H.449, B:R.489 pi-Stacking: B:F.229, B:F.229 pi-Cation interactions: B:R.537

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Moulinier, L. et al., The structure of an AspRS-tRNA(Asp) complex reveals a tRNA-dependent control mechanism. EMBO J. (2001)

Release Date

2001-09-28

Peptides

ASPARTYL-TRNA SYNTHETASE: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
B

ASPARTYL-TRNA SYNTHETASE

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