SMTL ID : 1it1.1

Solution structures of ferrocytochrome c3 from Desulfovibrio vulgaris Miyazaki F

Coordinates

PDB Format

Method

SOLUTION NMR

Oligo State

monomer

Ligands

4 x HEC: HEME C(Covalent)

HEC.1: 24 residues within 4Å: Chain A: P.2, K.3, A.4, P.5, L.9, K.10, M.11, F.20, H.22, H.25, K.26, V.28, K.29, C.30, C.33, H.34, Y.43, Q.44, K.45, C.46, A.47, M.69 Ligands: HEC.2, HEC.3 16 PLIP interactions: 16 interactions with chain A, Hydrophobic interactions: A:P.2, A:A.4, A:P.5, A:L.9, A:L.9, A:F.20, A:F.20, A:F.20, A:F.20, A:H.25 Hydrogen bonds: A:L.9 pi-Stacking: A:H.22, A:H.22, A:H.34 Metal complexes: A:H.22, A:H.34 HEC.2: 27 residues within 4Å: Chain A: M.11, C.33, H.34, H.35, V.37, D.42, Q.44, K.45, C.46, T.48, C.51, H.52, K.60, S.61, A.62, H.67, A.68, M.69, D.71, T.74, K.75, F.76, K.77, S.78, C.79 Ligands: HEC.1, HEC.3 14 PLIP interactions: 14 interactions with chain A, Hydrophobic interactions: A:V.37, A:Q.44, A:A.62, A:A.68, A:K.75 Hydrogen bonds: A:S.61, A:K.75 Salt bridges: A:H.67, A:K.75 pi-Stacking: A:H.35, A:H.52, A:H.52 Metal complexes: A:H.35, A:H.52 HEC.3: 27 residues within 4Å: Chain A: M.11, V.18, V.19, F.20, N.21, T.24, H.25, V.28, K.29, D.32, C.33, C.46, M.69, K.77, S.78, C.79, C.82, H.83, T.86, K.93, E.96, L.97, K.104, C.105 Ligands: HEC.1, HEC.2, HEC.4 11 PLIP interactions: 11 interactions with chain A, Hydrophobic interactions: A:V.18, A:V.28, A:K.77, A:T.86, A:K.104 Salt bridges: A:K.93, A:K.104 pi-Stacking: A:F.20, A:H.25 Metal complexes: A:H.25, A:H.83 HEC.4: 26 residues within 4Å: Chain A: M.11, D.12, K.13, T.14, K.15, Q.16, P.17, V.18, M.55, K.57, Y.65, Y.66, M.69, H.70, C.79, V.80, H.83, E.96, L.97, T.98, G.99, C.100, S.103, C.105, H.106 Ligands: HEC.3 20 PLIP interactions: 20 interactions with chain A, Hydrophobic interactions: A:M.11, A:T.14, A:Q.16, A:V.18, A:K.57, A:Y.65, A:V.80 Hydrogen bonds: A:T.14, A:T.14, A:K.15, A:V.18, A:Y.65, A:Y.65 Salt bridges: A:K.57 pi-Stacking: A:Y.66, A:H.106 pi-Cation interactions: A:H.70, A:H.106 Metal complexes: A:H.70, A:H.106

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Harada, E. et al., Redox-coupled conformational alternations in cytochrome c(3) from D. vulgaris Miyazaki F on the basis of its reduced solution structure. J.Mol.Biol. (2002)

Release Date

2002-07-10

Peptides

cytochrome c3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

cytochrome c3

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