- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.55 Å
- Oligo State
- homo-trimer
- Ligands
- 6 x MG: MAGNESIUM ION(Non-covalent)
- 3 x CDP: CYTIDINE-5'-DIPHOSPHATE(Non-covalent)
CDP.3: 18 residues within 4Å:- Chain A: D.8, H.10, H.42, D.56, I.57, G.58
- Chain C: L.100, P.103, K.104, L.105, G.106, R.109, F.131, K.132, T.133, E.135
- Ligands: MG.1, MG.2
18 PLIP interactions:8 interactions with chain A, 10 interactions with chain C- Hydrogen bonds: A:D.56, A:G.58, A:L.59, C:L.100, C:L.105, C:G.106, C:R.109, C:T.133, C:E.135
- Water bridges: A:S.35, A:I.57, A:I.57, C:K.132
- Salt bridges: A:H.10, A:H.42, C:K.132, C:K.132
- Hydrophobic interactions: C:T.133
CDP.7: 19 residues within 4Å:- Chain A: L.100, P.103, K.104, L.105, G.106, R.109, F.131, K.132, T.133, E.135
- Chain B: D.8, H.10, H.42, D.56, I.57, G.58, L.59
- Ligands: MG.4, MG.5
18 PLIP interactions:7 interactions with chain B, 11 interactions with chain A- Hydrogen bonds: B:D.56, B:G.58, B:L.59, A:L.100, A:L.105, A:G.106, A:R.109, A:T.133, A:E.135
- Water bridges: B:S.35, B:H.42, A:K.132, A:K.132
- Salt bridges: B:H.10, B:H.42, A:K.132, A:K.132
- Hydrophobic interactions: A:T.133
CDP.8: 19 residues within 4Å:- Chain B: L.100, P.103, K.104, L.105, G.106, R.109, F.131, K.132, T.133, E.135
- Chain C: D.8, H.10, H.42, D.56, I.57, G.58, L.59
- Ligands: MG.6, MG.9
18 PLIP interactions:10 interactions with chain B, 8 interactions with chain C- Hydrophobic interactions: B:T.133
- Hydrogen bonds: B:L.100, B:L.105, B:G.106, B:R.109, B:T.133, C:D.56, C:G.58, C:L.59
- Water bridges: B:K.132, B:K.132, C:H.10, C:S.35, C:I.57
- Salt bridges: B:K.132, B:K.132, C:H.10, C:H.42
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kishida, H. et al., Structure and catalytic mechanism of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MECDP) synthase, an enzyme in the non-mevalonate pathway of isoprenoid synthesis. Acta Crystallogr.,Sect.D (2003)
- Release Date
- 2002-09-11
- Peptides
- 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.55 Å
- Oligo State
- homo-trimer
- Ligands
- 6 x MG: MAGNESIUM ION(Non-covalent)
- 3 x CDP: CYTIDINE-5'-DIPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kishida, H. et al., Structure and catalytic mechanism of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MECDP) synthase, an enzyme in the non-mevalonate pathway of isoprenoid synthesis. Acta Crystallogr.,Sect.D (2003)
- Release Date
- 2002-09-11
- Peptides
- 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C