SMTL ID : 1iy8.2 (1 other biounit)

Crystal Structure of Levodione Reductase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-tetramer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 26 residues within 4Å: Chain A: G.20, G.22, S.23, G.24, L.25, D.44, V.45, A.71, D.72, V.73, N.99, A.100, G.101, I.102, I.123, T.150, S.152, Y.165, K.169, P.195, G.196, T.200, P.201, M.202, V.203 Ligands: MRD.2 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:V.203 Hydrogen bonds: A:S.23, A:L.25, A:V.45, A:D.72, A:D.72, A:V.73, A:N.99, A:G.101, A:S.152, A:Y.165, A:K.169, A:G.196, A:T.200, A:T.200, A:M.202 Water bridges: A:G.26, A:N.99 NAD.3: 26 residues within 4Å: Chain B: G.20, G.22, S.23, G.24, L.25, D.44, V.45, A.71, D.72, V.73, N.99, A.100, G.101, I.102, I.123, T.150, S.152, Y.165, K.169, P.195, G.196, T.200, P.201, M.202, V.203 Ligands: MRD.4 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:V.203 Hydrogen bonds: B:S.23, B:L.25, B:V.45, B:D.72, B:V.73, B:N.99, B:G.101, B:Y.165, B:K.169, B:G.196, B:T.200, B:T.200, B:M.202 Water bridges: B:G.26, B:N.99 NAD.5: 26 residues within 4Å: Chain C: G.20, G.22, S.23, G.24, L.25, D.44, V.45, A.71, D.72, V.73, N.99, A.100, G.101, I.102, I.123, T.150, S.152, Y.165, K.169, P.195, G.196, T.200, P.201, M.202, V.203 Ligands: MRD.6 19 PLIP interactions: 19 interactions with chain C Hydrophobic interactions: C:V.203 Hydrogen bonds: C:G.22, C:S.23, C:L.25, C:V.45, C:D.72, C:D.72, C:V.73, C:N.99, C:G.101, C:Y.165, C:K.169, C:G.196, C:T.200, C:M.202 Water bridges: C:G.26, C:S.46, C:S.46, C:N.99 NAD.7: 26 residues within 4Å: Chain D: G.20, G.22, S.23, G.24, L.25, D.44, V.45, A.71, D.72, V.73, N.99, A.100, G.101, I.102, I.123, T.150, S.152, Y.165, K.169, P.195, G.196, T.200, P.201, M.202, V.203 Ligands: MRD.8 16 PLIP interactions: 16 interactions with chain D Hydrophobic interactions: D:V.203 Hydrogen bonds: D:S.23, D:L.25, D:V.45, D:D.72, D:D.72, D:V.73, D:N.99, D:G.101, D:Y.165, D:K.169, D:G.196, D:T.200, D:M.202 Water bridges: D:G.26, D:N.99

4 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)

MRD.2: 7 residues within 4Å: Chain A: E.103, I.159, Q.162, Y.165, S.206, F.222 Ligands: NAD.1 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:E.103, A:Y.165, A:F.222 MRD.4: 8 residues within 4Å: Chain B: E.103, I.159, Q.162, Y.165, M.202, S.206, F.222 Ligands: NAD.3 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:E.103, B:Y.165, B:F.222 MRD.6: 8 residues within 4Å: Chain C: E.103, I.159, Q.162, Y.165, M.202, S.206, M.207 Ligands: NAD.5 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:E.103, C:Y.165 MRD.8: 9 residues within 4Å: Chain D: E.103, I.159, Q.162, Y.165, M.202, S.206, M.207, F.222 Ligands: NAD.7 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:E.103, D:Y.165, D:F.222

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sogabe, S. et al., The Crystal Structure and Stereospecificity of Levodione Reductase from Corynebacterium aquaticum M-13. J.BIOL.CHEM. (2003)

Release Date

2003-05-27

Peptides

LEVODIONE REDUCTASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

C
G

D
H

LEVODIONE REDUCTASE

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