SMTL ID : 1iyk.3 (2 other biounits)

Crystal structure of candida albicans N-myristoyltransferase with myristoyl-COA and peptidic inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x MYA: TETRADECANOYL-COA(Non-covalent)

MYA.1: 28 residues within 4Å: Chain A: N.47, Y.48, V.49, I.115, N.116, F.117, L.118, C.119, I.120, R.125, N.126, K.127, R.128, L.129, A.130, P.131, I.134, T.138, V.141, N.142, I.146, W.147, Q.148, A.149, Y.151, T.152, L.157, F.361 25 PLIP interactions: 25 interactions with chain A Hydrophobic interactions: A:Y.48, A:V.49, A:I.115, A:L.118, A:L.118, A:I.120, A:I.134, A:V.141, A:A.149, A:Y.151, A:Y.151, A:Y.151, A:F.361 Hydrogen bonds: A:Y.48, A:L.118, A:L.118, A:I.120, A:R.125, A:N.126, A:R.128, A:L.129, A:A.130 Water bridges: A:K.127, A:K.127 Salt bridges: A:R.128 MYA.3: 30 residues within 4Å: Chain B: N.47, Y.48, V.49, I.115, N.116, F.117, L.118, C.119, I.120, R.125, N.126, K.127, R.128, L.129, A.130, P.131, I.134, T.138, V.141, N.142, I.146, W.147, Q.148, A.149, Y.151, T.152, I.156, L.157, F.361 Ligands: MIM.4 26 PLIP interactions: 26 interactions with chain B Hydrophobic interactions: B:Y.48, B:V.49, B:I.115, B:I.115, B:L.118, B:L.118, B:I.120, B:I.134, B:V.141, B:A.149, B:Y.151, B:Y.151, B:Y.151, B:F.361, B:F.361 Hydrogen bonds: B:L.118, B:L.118, B:I.120, B:R.125, B:N.126, B:R.128, B:L.129, B:A.130 Water bridges: B:K.127, B:K.127 Salt bridges: B:R.128

2 x MIM: [CYCLOHEXYLETHYL]-[[[[4-[2-METHYL-1-IMIDAZOLYL-BUTYL]PHENYL]ACETYL]-SERYL]-LYSINYL]-AMINE(Non-covalent)

MIM.2: 21 residues within 4Å: Chain A: V.49, E.50, D.51, D.53, F.58, Y.60, N.116, T.152, Y.166, H.168, P.170, F.181, Y.197, F.280, G.350, S.351, G.352, D.353, G.354, L.356, L.392 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:V.49, A:F.58, A:F.58, A:Y.166, A:P.170, A:F.181, A:F.181 Hydrogen bonds: A:D.51, A:D.53, A:D.53, A:Y.60, A:F.181, A:D.353, A:D.353, A:D.353, A:D.353, A:G.354 Water bridges: A:I.52, A:I.52, A:N.116 MIM.4: 24 residues within 4Å: Chain B: V.49, E.50, D.51, I.52, D.53, F.56, F.58, Y.60, N.116, T.152, Y.166, H.168, P.170, F.181, Y.197, F.280, G.350, S.351, G.352, D.353, G.354, L.356, L.392 Ligands: MYA.3 20 PLIP interactions: 20 interactions with chain B Hydrophobic interactions: B:V.49, B:F.56, B:F.58, B:F.58, B:Y.166, B:P.170, B:F.181, B:F.280, B:L.356 Hydrogen bonds: B:D.53, B:D.53, B:T.152, B:F.181, B:D.353, B:D.353, B:D.353, B:G.354, B:G.354 Water bridges: B:I.52, B:I.52

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sogabe, S. et al., Crystal Structures of Candida albicans N-Myristoyltransferase with Two Distinct Inhibitors. CHEM.BIOL. (2002)

Release Date

2002-12-30

Peptides

MYRISTOYL-COA:PROTEIN N-MYRISTOYLTRANSFERASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MYRISTOYL-COA:PROTEIN N-MYRISTOYLTRANSFERASE

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