SMTL ID : 1iyz.1

Crystal Structures of the Quinone Oxidoreductase from Thermus thermophilus HB8 and Its Complex with NADPH

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

2 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.1: 23 residues within 4Å: Chain A: N.38, F.39, V.109, T.113, A.133, G.136, A.137, L.138, A.157, S.158, K.162, Y.177, V.196, I.217, G.218, A.220, E.221, F.242, W.243, L.244, R.292, H.294, G.296 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:V.109, A:T.113, A:I.217 Hydrogen bonds: A:F.39, A:A.137, A:L.138, A:S.158, A:K.162, A:Y.177, A:Y.177, A:V.196, A:I.217, A:A.220, A:E.221, A:L.244, A:R.292 Salt bridges: A:K.162, A:R.292, A:H.294 pi-Cation interactions: A:R.292 NDP.2: 23 residues within 4Å: Chain B: N.38, F.39, V.109, T.113, A.133, G.136, A.137, L.138, A.157, S.158, K.162, Y.177, V.196, I.217, G.218, A.220, E.221, F.242, W.243, L.244, R.292, H.294, G.296 20 PLIP interactions: 20 interactions with chain B Hydrophobic interactions: B:V.109, B:T.113, B:I.217 Hydrogen bonds: B:F.39, B:A.137, B:L.138, B:S.158, B:K.162, B:Y.177, B:V.196, B:I.217, B:A.220, B:E.221, B:L.244, B:R.292, B:H.294 Salt bridges: B:K.162, B:R.292, B:H.294 pi-Cation interactions: B:R.292

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shimomura, Y. et al., Crystal Structures of the Quinone Oxidoreductase from Thermus thermophilus HB8 and Its Complex with NADPH: Implication for NADPH and Substrate Recognition. J.Bacteriol. (2003)

Release Date

2003-07-15

Peptides

QUINONE OXIDOREDUCTASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

QUINONE OXIDOREDUCTASE

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