SMTL ID : 1j2r.3 (2 other biounits)

Crystal structure of Escherichia coli gene product Yecd at 1.3 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

homo-dimer

Ligands

6 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 2 residues within 4Å: Chain A: R.66, W.95 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.95, A:W.95, A:W.95, A:W.95 MPD.2: 6 residues within 4Å: Chain A: W.69, Y.73, S.85, P.86, K.88, L.90 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.69, A:P.86, A:K.88, A:L.90 MPD.3: 4 residues within 4Å: Chain A: R.185 Chain B: I.31, F.34, I.144 7 PLIP interactions: 5 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:I.31, B:F.34, B:F.34 Water bridges: B:S.141, B:S.141 Hydrogen bonds: A:R.185, A:R.185 MPD.4: 5 residues within 4Å: Chain A: I.31, F.34, W.69, I.144 Chain B: R.185 8 PLIP interactions: 6 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:I.31, A:F.34, A:F.34, A:W.69 Water bridges: A:S.141, A:S.141 Hydrogen bonds: B:R.185, B:R.185 MPD.5: 8 residues within 4Å: Chain B: W.69, Y.73, S.85, P.86, K.88, L.90, P.91, W.94 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:W.69, B:P.86, B:K.88, B:L.90 MPD.6: 7 residues within 4Å: Chain B: W.69, Y.73, A.76, L.77, S.85, P.86, A.87 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:W.69, B:Y.73, B:A.87 Water bridges: B:W.69, B:L.77, B:S.85, B:S.85

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Suhre, K. et al., Crystal structure of escherichia coli gene product Yecd at 1.3 A resolution. To be published

Release Date

2004-01-27

Peptides

Hypothetical isochorismatase family protein yecD: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Hypothetical isochorismatase family protein yecD

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