SMTL ID : 1jay.1

Structure of Coenzyme F420H2:NADP+ Oxidoreductase (FNO) with its substrates bound

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-dimer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 3 residues within 4Å: Chain A: S.169, I.171, L.174 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.171, A:L.174 Water bridges: A:G.173 NA.2: 3 residues within 4Å: Chain B: S.169, I.171, L.174 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:L.174 Water bridges: B:S.169, B:S.169, B:E.170, B:I.171, B:G.173, B:L.174

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.3: 23 residues within 4Å: Chain A: G.7, T.9, G.10, N.11, L.12, S.31, R.32, K.36, T.71, I.72, P.73, W.74, H.76, T.80, P.96, L.97, V.98, L.132, H.133, I.135, P.136, A.137 Ligands: F42.5 25 PLIP interactions: 25 interactions with chain A Hydrogen bonds: A:T.9, A:N.11, A:N.11, A:L.12, A:R.32, A:I.72, A:H.76, A:V.98, A:V.98, A:A.137 Water bridges: A:N.11, A:G.13, A:R.32, A:R.32, A:R.32, A:R.32, A:K.36, A:K.36, A:W.74, A:H.76, A:T.80 Salt bridges: A:R.32, A:K.36 pi-Cation interactions: A:R.32, A:R.32 NAP.4: 23 residues within 4Å: Chain B: G.7, T.9, G.10, N.11, L.12, S.31, R.32, K.36, T.71, I.72, P.73, W.74, H.76, T.80, P.96, L.97, V.98, L.132, H.133, I.135, P.136, A.137 Ligands: F42.6 23 PLIP interactions: 23 interactions with chain B Hydrophobic interactions: B:L.12 Hydrogen bonds: B:T.9, B:N.11, B:N.11, B:L.12, B:R.32, B:R.32, B:I.72, B:W.74, B:H.76, B:V.98, B:V.98, B:A.137 Water bridges: B:N.11, B:N.11, B:G.13, B:R.32, B:K.36, B:N.58 Salt bridges: B:R.32, B:K.36 pi-Cation interactions: B:R.32, B:R.32

2 x F42: COENZYME F420(Non-covalent)

F42.5: 14 residues within 4Å: Chain A: V.98, H.133, T.134, P.136, A.137, A.138, N.142, T.192, I.195, L.196, M.199, E.206, L.207 Ligands: NAP.3 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:P.136, A:A.138, A:T.192, A:L.196 Hydrogen bonds: A:A.137, A:E.206, A:L.207, A:L.207 F42.6: 12 residues within 4Å: Chain B: V.98, H.133, T.134, P.136, A.137, T.192, I.195, L.196, M.199, E.206, L.207 Ligands: NAP.4 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:P.136, B:T.192, B:L.196 Hydrogen bonds: B:A.137, B:E.206, B:L.207, B:L.207

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Warkentin, E. et al., Structures of F420H2:NADP+ oxidoreductase with and without its substrates bound. EMBO J. (2001)

Release Date

2001-12-21

Peptides

Coenzyme F420H2:NADP+ Oxidoreductase (FNO): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Coenzyme F420H2:NADP+ Oxidoreductase (FNO)

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