SMTL ID : 1jcm.2 (1 other biounit)

TRPC STABILITY MUTANT CONTAINING AN ENGINEERED DISULPHIDE BRIDGE AND IN COMPLEX WITH A CDRP-RELATED SUBSTRATE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-trimer

Ligands

18 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 4 residues within 4Å: Chain A: S.60, K.61, R.186, I.193 Ligand excluded by PLIP PO4.2: 1 residues within 4Å: Chain A: I.14 Ligand excluded by PLIP PO4.3: 4 residues within 4Å: Chain A: E.90, S.96, F.97, N.98 Ligand excluded by PLIP PO4.4: 11 residues within 4Å: Chain A: R.224, H.228 Chain B: R.224, H.228 Chain C: R.224, H.228 Ligands: PO4.5, PO4.11, PO4.12, PO4.18, PO4.19 Ligand excluded by PLIP PO4.5: 11 residues within 4Å: Chain A: R.224 Chain B: R.224 Chain C: R.224 Ligands: PO4.4, PO4.6, PO4.11, PO4.12, PO4.13, PO4.18, PO4.19, PO4.20 Ligand excluded by PLIP PO4.6: 5 residues within 4Å: Ligands: PO4.5, PO4.12, PO4.13, PO4.19, PO4.20 Ligand excluded by PLIP PO4.8: 4 residues within 4Å: Chain B: S.60, K.61, R.186, I.193 Ligand excluded by PLIP PO4.9: 1 residues within 4Å: Chain B: I.14 Ligand excluded by PLIP PO4.10: 4 residues within 4Å: Chain B: E.90, S.96, F.97, N.98 Ligand excluded by PLIP PO4.11: 11 residues within 4Å: Chain A: R.224, H.228 Chain B: R.224, H.228 Chain C: R.224, H.228 Ligands: PO4.4, PO4.5, PO4.12, PO4.18, PO4.19 Ligand excluded by PLIP PO4.12: 11 residues within 4Å: Chain A: R.224 Chain B: R.224 Chain C: R.224 Ligands: PO4.4, PO4.5, PO4.6, PO4.11, PO4.13, PO4.18, PO4.19, PO4.20 Ligand excluded by PLIP PO4.13: 5 residues within 4Å: Ligands: PO4.5, PO4.6, PO4.12, PO4.19, PO4.20 Ligand excluded by PLIP PO4.15: 4 residues within 4Å: Chain C: S.60, K.61, R.186, I.193 Ligand excluded by PLIP PO4.16: 1 residues within 4Å: Chain C: I.14 Ligand excluded by PLIP PO4.17: 4 residues within 4Å: Chain C: E.90, S.96, F.97, N.98 Ligand excluded by PLIP PO4.18: 11 residues within 4Å: Chain A: R.224, H.228 Chain B: R.224, H.228 Chain C: R.224, H.228 Ligands: PO4.4, PO4.5, PO4.11, PO4.12, PO4.19 Ligand excluded by PLIP PO4.19: 11 residues within 4Å: Chain A: R.224 Chain B: R.224 Chain C: R.224 Ligands: PO4.4, PO4.5, PO4.6, PO4.11, PO4.12, PO4.13, PO4.18, PO4.20 Ligand excluded by PLIP PO4.20: 5 residues within 4Å: Ligands: PO4.5, PO4.6, PO4.12, PO4.13, PO4.19 Ligand excluded by PLIP

3 x 137: 1-(O-CARBOXY-PHENYLAMINO)-1-DEOXY-D-RIBULOSE-5-PHOSPHATE(Non-covalent)

137.7: 19 residues within 4Å: Chain A: I.8, E.53, K.55, S.58, P.59, S.60, F.93, K.114, F.116, R.186, L.188, L.191, E.214, S.215, G.216, L.234, I.235, G.236, S.237 25 PLIP interactions: 25 interactions with chain A Hydrophobic interactions: A:I.8, A:P.59, A:F.116, A:F.116, A:L.188, A:L.191 Hydrogen bonds: A:K.55, A:S.58, A:S.60, A:S.60, A:K.114, A:K.114, A:R.186, A:G.216, A:G.236, A:S.237 Water bridges: A:K.55, A:K.55, A:K.61, A:G.216, A:I.217 Salt bridges: A:K.55, A:K.55, A:R.186 pi-Stacking: A:F.93 137.14: 19 residues within 4Å: Chain B: I.8, E.53, K.55, S.58, P.59, S.60, F.93, K.114, F.116, R.186, L.188, L.191, E.214, S.215, G.216, L.234, I.235, G.236, S.237 25 PLIP interactions: 25 interactions with chain B Hydrophobic interactions: B:I.8, B:P.59, B:F.116, B:F.116, B:L.188, B:L.191 Hydrogen bonds: B:K.55, B:S.58, B:S.60, B:S.60, B:K.114, B:K.114, B:R.186, B:G.216, B:G.236, B:S.237 Water bridges: B:K.55, B:K.55, B:K.61, B:G.216, B:I.217 Salt bridges: B:K.55, B:K.55, B:R.186 pi-Stacking: B:F.93 137.21: 19 residues within 4Å: Chain C: I.8, E.53, K.55, S.58, P.59, S.60, F.93, K.114, F.116, R.186, L.188, L.191, E.214, S.215, G.216, L.234, I.235, G.236, S.237 25 PLIP interactions: 25 interactions with chain C Hydrophobic interactions: C:I.8, C:P.59, C:F.116, C:F.116, C:L.188, C:L.191 Hydrogen bonds: C:K.55, C:S.58, C:S.60, C:S.60, C:K.114, C:K.114, C:R.186, C:G.216, C:G.236, C:S.237 Water bridges: C:K.55, C:K.55, C:K.61, C:G.216, C:I.217 Salt bridges: C:K.55, C:K.55, C:R.186 pi-Stacking: C:F.93

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ivens, A. et al., Stabilization of a (betaalpha)8-barrel protein by an engineered disulfide bridge. Eur.J.Biochem. (2002)

Release Date

2002-06-10

Peptides

INDOLE-3-GLYCEROL-PHOSPHATE SYNTHASE: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
P

B
P

C
P

INDOLE-3-GLYCEROL-PHOSPHATE SYNTHASE

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