SMTL ID : 1jds.1

5'-DEOXY-5'-METHYLTHIOADENOSINE PHOSPHORYLASE COMPLEX WITH PHOSPHATE (SPACE GROUP P21)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-hexamer

Ligands

6 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 8 residues within 4Å: Chain A: G.21, R.25, R.86, Y.87, G.88, T.89 Chain D: R.43 Ligands: TRS.2 7 PLIP interactions: 1 interactions with chain D, 6 interactions with chain A Salt bridges: D:R.43, A:R.25, A:R.86 Hydrogen bonds: A:G.21, A:Y.87, A:T.89, A:T.89 PO4.3: 8 residues within 4Å: Chain B: G.21, R.25, R.86, Y.87, G.88, T.89 Chain C: R.43 Ligands: TRS.4 7 PLIP interactions: 6 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:G.21, B:Y.87, B:T.89, B:T.89 Salt bridges: B:R.25, B:R.86, C:R.43 PO4.5: 8 residues within 4Å: Chain B: R.43 Chain C: G.21, R.25, R.86, Y.87, G.88, T.89 Ligands: TRS.6 7 PLIP interactions: 6 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:G.21, C:Y.87, C:T.89, C:T.89 Salt bridges: C:R.25, C:R.86, B:R.43 PO4.7: 7 residues within 4Å: Chain A: R.43 Chain D: G.21, R.25, R.86, G.88, T.89 Ligands: TRS.8 7 PLIP interactions: 6 interactions with chain D, 1 interactions with chain A Hydrogen bonds: D:G.21, D:Y.87, D:T.89, D:T.89 Salt bridges: D:R.25, D:R.86, A:R.43 PO4.9: 8 residues within 4Å: Chain E: G.21, R.25, R.86, Y.87, G.88, T.89 Chain F: R.43 Ligands: TRS.10 7 PLIP interactions: 6 interactions with chain E, 1 interactions with chain F Hydrogen bonds: E:G.21, E:Y.87, E:T.89, E:T.89 Salt bridges: E:R.25, E:R.86, F:R.43 PO4.11: 7 residues within 4Å: Chain E: R.43 Chain F: G.21, R.25, R.86, G.88, T.89 Ligands: TRS.12 7 PLIP interactions: 1 interactions with chain E, 6 interactions with chain F Salt bridges: E:R.43, F:R.25, F:R.86 Hydrogen bonds: F:G.21, F:Y.87, F:T.89, F:T.89

6 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.2: 8 residues within 4Å: Chain A: R.86, T.89, E.180, M.181, E.182 Chain D: H.5, R.43 Ligands: PO4.1 4 PLIP interactions: 1 interactions with chain D, 3 interactions with chain A Hydrogen bonds: D:H.5, A:T.89, A:M.181, A:E.182 TRS.4: 10 residues within 4Å: Chain B: R.86, T.89, F.160, V.179, E.180, M.181, E.182 Chain C: H.5, R.43 Ligands: PO4.3 6 PLIP interactions: 1 interactions with chain C, 5 interactions with chain B Hydrogen bonds: C:H.5, B:T.89, B:T.89, B:E.180, B:M.181, B:E.182 TRS.6: 9 residues within 4Å: Chain B: H.5, R.43 Chain C: R.86, T.89, F.160, E.180, M.181, E.182 Ligands: PO4.5 6 PLIP interactions: 5 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:T.89, C:T.89, C:E.180, C:M.181, C:E.182, B:H.5 TRS.8: 9 residues within 4Å: Chain A: H.5, R.43 Chain D: R.86, T.89, V.179, E.180, M.181, E.182 Ligands: PO4.7 5 PLIP interactions: 1 interactions with chain A, 4 interactions with chain D Hydrogen bonds: A:H.5, D:R.86, D:T.89, D:M.181, D:E.182 TRS.10: 10 residues within 4Å: Chain E: R.86, T.89, F.160, V.179, E.180, M.181, E.182 Chain F: H.5, R.43 Ligands: PO4.9 4 PLIP interactions: 3 interactions with chain E, 1 interactions with chain F Hydrogen bonds: E:T.89, E:M.181, E:E.182, F:H.5 TRS.12: 8 residues within 4Å: Chain E: H.5, R.43 Chain F: R.86, T.89, E.180, M.181, E.182 Ligands: PO4.11 4 PLIP interactions: 3 interactions with chain F, 1 interactions with chain E Hydrogen bonds: F:T.89, F:M.181, F:E.182, E:H.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Appleby, T.C. et al., Three-dimensional structure of a hyperthermophilic 5'-deoxy-5'-methylthioadenosine phosphorylase from Sulfolobus solfataricus. J.Biol.Chem. (2001)

Release Date

2001-10-26

Peptides

5'-METHYLTHIOADENOSINE PHOSPHORYLASE: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

5'-METHYLTHIOADENOSINE PHOSPHORYLASE

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