SMTL ID : 1jeh.1

CRYSTAL STRUCTURE OF YEAST E3, LIPOAMIDE DEHYDROGENASE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 43 residues within 4Å: Chain A: I.11, G.12, G.13, G.14, P.15, A.16, G.17, V.34, E.35, K.36, R.37, G.41, G.42, T.43, C.44, V.47, G.48, C.49, S.52, K.53, N.117, G.118, A.152, T.153, G.154, S.155, S.173, I.194, R.285, Y.288, A.290, G.291, L.292, G.324, D.325, M.331, L.332, A.333, H.334, A.336, Y.364 Chain B: H.457, P.458 23 PLIP interactions: 22 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:I.194, A:I.194 Hydrogen bonds: A:A.16, A:G.17, A:K.36, A:R.37, A:R.37, A:T.43, A:T.43, A:T.43, A:C.44, A:K.53, A:N.117, A:G.118, A:G.118, A:G.154, A:S.155, A:D.325, A:M.331, A:A.333, A:H.334, B:H.457 pi-Cation interactions: A:K.36 FAD.2: 41 residues within 4Å: Chain A: H.457, P.458 Chain B: I.11, G.12, G.13, G.14, P.15, A.16, G.17, V.34, E.35, K.36, R.37, G.42, T.43, C.44, V.47, G.48, C.49, S.52, K.53, N.117, G.118, A.152, T.153, G.154, S.155, S.173, I.194, R.285, Y.288, A.290, G.291, L.292, G.324, D.325, M.331, L.332, A.333, H.334, Y.364 21 PLIP interactions: 20 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:I.194, B:I.194 Hydrogen bonds: B:G.14, B:A.16, B:G.17, B:K.36, B:R.37, B:T.43, B:T.43, B:C.44, B:K.53, B:N.117, B:G.118, B:G.118, B:S.155, B:D.325, B:M.331, B:A.333, B:H.334, A:H.457 pi-Cation interactions: B:K.36

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Toyoda, T. et al., Crystal structure of eucaryotic E3, lipoamide dehydrogenase from yeast. J.Biochem. (1998)

Release Date

2001-07-11

Peptides

DIHYDROLIPOAMIDE DEHYDROGENASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

DIHYDROLIPOAMIDE DEHYDROGENASE

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