Toggle navigation
Modelling
myWorkspace
Alignment Mode
User Template Mode
DeepView Project Mode
Modelling API
Template Library
Repository
SWISS-MODEL Repository
Repository API
3D-Beacons API
Annotation Projects
TBvar3D
Tools
Structure Assessment
Structure Comparison
QMEAN
Documentation
SWISS-MODEL
Examples
Video Tutorial
New Features
SWISS-MODEL Repository
QMEAN
Structure Assessment
Structure Comparison
TBvar3D
Protein Structure Course
References
Log in
Create Account
SMTL ID : 1jil.2
(1 other biounit)
Crystal structure of S. aureus TyrRS in complex with SB284485
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.20 Å
Oligo State
homo-dimer
Ligands
2 x
485
:
[2-AMINO-3-(4-HYDROXY-PHENYL)-PROPIONYLAMINO]- (3,4,5-TRIHYDROXY-6-METHYL-TETRAHYDRO-PYRAN-2-YL)- ACETIC ACID
(Non-covalent)
485.1:
19 residues within 4Å:
Chain A:
Y.36
,
G.38
,
A.39
,
D.40
,
H.50
,
P.53
,
F.54
,
L.70
,
T.75
,
D.80
,
N.124
,
Y.170
,
Q.174
,
D.177
,
Q.190
,
G.192
,
G.193
,
D.195
,
Q.196
19
PLIP interactions
:
19 interactions with chain A
Hydrophobic interactions:
A:Y.36
,
A:F.54
,
A:L.70
,
A:Q.174
Hydrogen bonds:
A:Y.36
,
A:Y.36
,
A:D.40
,
A:D.80
,
A:Y.170
,
A:Q.174
,
A:D.177
,
A:G.193
,
A:D.195
,
A:Q.196
,
A:N.199
Water bridges:
A:G.38
,
A:D.80
,
A:D.195
Salt bridges:
A:H.50
485.2:
19 residues within 4Å:
Chain B:
Y.36
,
G.38
,
A.39
,
D.40
,
H.50
,
P.53
,
F.54
,
L.70
,
T.75
,
D.80
,
N.124
,
Y.170
,
Q.174
,
D.177
,
Q.190
,
G.192
,
G.193
,
D.195
,
Q.196
17
PLIP interactions
:
17 interactions with chain B
Hydrophobic interactions:
B:Y.36
,
B:F.54
,
B:L.70
,
B:Q.174
Hydrogen bonds:
B:Y.36
,
B:D.40
,
B:Y.170
,
B:Y.170
,
B:Q.174
,
B:G.193
,
B:D.195
,
B:Q.196
,
B:N.199
Water bridges:
B:G.38
,
B:D.195
,
B:D.195
Salt bridges:
B:H.50
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Qiu, X. et al., Crystal structure of Staphylococcus aureus tyrosyl-tRNA synthetase in complex with a class of potent and specific inhibitors. Protein Sci. (2001)
Release Date
2001-10-26
Peptides
tyrosyl-tRNA synthetase:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
A
Export Alignment
FASTA format
Clustal Format
PNG Image
Secondary Structure
None
DSSP
PSIPRED
SSpro
Colour Scheme
Fade Mismatches
Enhance Mismatches
Chain
Unique Chain
Rainbow
2° Structure
Bfactor
Bfactor Range
SOA
Entropy
Clustal
Hydrophobic
Size
Charged
Polar
Proline
Ser/Thr
Cysteine
Aliphatic
Aromatic
No Colour
Background
3D Viewer
NGL
PV
2D
FASTA
Multi FASTA
ClustalW
PNG
tyrosyl-tRNA synthetase
Toggle Identical (AB)
Related Entries With Identical Sequence
1jii.1
|
1jii.2
|
1jij.1
|
1jij.2
|
1jik.1
|
1jik.2
|
1jil.1
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog
Background
Transparent
Resolution
Low
Medium
High
Extreme