SMTL ID : 1jke.1 (6 other biounits)

D-Tyr tRNATyr deacylase from Escherichia coli

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

homo-dimer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 1 residues within 4Å: Chain A: E.16 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.16, H2O.2 ZN.2: 1 residues within 4Å: Chain A: E.111 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.111, A:E.111, H2O.2 ZN.3: 2 residues within 4Å: Chain A: E.103, D.107 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.103, A:D.107 ZN.4: 1 residues within 4Å: Chain B: E.18 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:E.18 ZN.5: 2 residues within 4Å: Chain B: E.103, D.107 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.103, B:D.107, H2O.4, H2O.4 ZN.6: 1 residues within 4Å: Chain B: E.111 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.111, B:E.111, H2O.6 ZN.7: 1 residues within 4Å: Chain B: D.100 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.100, H2O.5, H2O.7 ZN.8: 1 residues within 4Å: Chain B: D.36 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.36, B:D.36, H2O.6, H2O.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ferri-Fioni, M.L. et al., Structure of crystalline D-Tyr-tRNA(Tyr) deacylase. A representative of a new class of tRNA-dependent hydrolases. J.Biol.Chem. (2001)

Release Date

2002-01-25

Peptides

D-Tyr-tRNATyr deacylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

D-Tyr-tRNATyr deacylase

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