SMTL ID : 1joa.2 (1 other biounit)

NADH PEROXIDASE WITH CYSTEINE-SULFENIC ACID

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 32 residues within 4Å: Chain A: L.6, G.7, S.9, H.10, G.11, E.32, K.33, S.41, C.42, T.77, E.78, I.79, S.110, P.111, G.112, A.113, M.131, R.132, Y.159, I.160, E.163, N.247, G.280, D.281, A.297, L.298, A.299, T.300, A.302 Chain B: F.424, Q.425, P.426 27 PLIP interactions: 25 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:R.132, A:I.160 Hydrogen bonds: A:S.9, A:G.11, A:K.33, A:I.79, A:I.79, A:A.113, A:Y.159, A:V.279, A:D.281, A:A.297, A:A.299, A:T.300, B:F.424, B:Q.425 Water bridges: A:S.8, A:S.9, A:S.9, A:K.33, A:S.38, A:E.78, A:E.78, A:R.132, A:R.132, A:N.247 Salt bridges: A:R.132 FAD.2: 32 residues within 4Å: Chain A: F.424, Q.425, P.426 Chain B: L.6, G.7, S.9, H.10, G.11, E.32, K.33, S.41, C.42, T.77, E.78, I.79, S.110, P.111, G.112, A.113, M.131, R.132, Y.159, I.160, E.163, N.247, G.280, D.281, A.297, L.298, A.299, T.300, A.302 24 PLIP interactions: 22 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:R.132, B:I.160 Hydrogen bonds: B:S.9, B:G.11, B:K.33, B:I.79, B:I.79, B:A.113, B:V.279, B:D.281, B:A.297, B:A.299, B:T.300, A:F.424, A:Q.425 Water bridges: B:S.8, B:S.9, B:S.9, B:K.33, B:S.38, B:R.132, B:R.132, B:N.247 Salt bridges: B:R.132

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yeh, J.I. et al., Structure of the native cysteine-sulfenic acid redox center of enterococcal NADH peroxidase refined at 2.8 A resolution. Biochemistry (1996)

Release Date

1997-01-11

Peptides

NADH PEROXIDASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

NADH PEROXIDASE

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