SMTL ID : 1jpu.1 (1 other biounit)

Crystal Structure of Bacillus Stearothermophilus Glycerol Dehydrogenase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-octamer

Ligands

16 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: D.123, D.173, H.256, H.274 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.173, A:H.256, A:H.274, H2O.1, H2O.1 ZN.2: 2 residues within 4Å: Chain A: E.268, H.271 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.268, A:E.268, A:H.271 ZN.3: 4 residues within 4Å: Chain B: D.123, D.173, H.256, H.274 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.173, B:H.256, B:H.274, H2O.10, H2O.10 ZN.4: 2 residues within 4Å: Chain B: E.268, H.271 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:E.268, B:E.268, B:H.271 ZN.5: 4 residues within 4Å: Chain C: D.123, D.173, H.256, H.274 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:D.173, C:H.256, C:H.274, H2O.19, H2O.19 ZN.6: 2 residues within 4Å: Chain C: E.268, H.271 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:E.268, C:E.268, C:H.271 ZN.7: 4 residues within 4Å: Chain D: D.123, D.173, H.256, H.274 5 PLIP interactions: 3 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:D.173, D:H.256, D:H.274, H2O.28, H2O.28 ZN.8: 2 residues within 4Å: Chain D: E.268, H.271 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:E.268, D:E.268, D:H.271 ZN.9: 4 residues within 4Å: Chain E: D.123, D.173, H.256, H.274 5 PLIP interactions: 3 interactions with chain E, 2 Ligand-Water interactions Metal complexes: E:D.173, E:H.256, E:H.274, H2O.37, H2O.37 ZN.10: 2 residues within 4Å: Chain E: E.268, H.271 3 PLIP interactions: 3 interactions with chain E Metal complexes: E:E.268, E:E.268, E:H.271 ZN.11: 4 residues within 4Å: Chain F: D.123, D.173, H.256, H.274 5 PLIP interactions: 3 interactions with chain F, 2 Ligand-Water interactions Metal complexes: F:D.173, F:H.256, F:H.274, H2O.46, H2O.47 ZN.12: 2 residues within 4Å: Chain F: E.268, H.271 3 PLIP interactions: 3 interactions with chain F Metal complexes: F:E.268, F:E.268, F:H.271 ZN.13: 4 residues within 4Å: Chain G: D.123, D.173, H.256, H.274 5 PLIP interactions: 3 interactions with chain G, 2 Ligand-Water interactions Metal complexes: G:D.173, G:H.256, G:H.274, H2O.56, H2O.56 ZN.14: 2 residues within 4Å: Chain G: E.268, H.271 3 PLIP interactions: 3 interactions with chain G Metal complexes: G:E.268, G:E.268, G:H.271 ZN.15: 4 residues within 4Å: Chain H: D.123, D.173, H.256, H.274 5 PLIP interactions: 3 interactions with chain H, 2 Ligand-Water interactions Metal complexes: H:D.173, H:H.256, H:H.274, H2O.65, H2O.65 ZN.16: 2 residues within 4Å: Chain H: E.268, H.271 3 PLIP interactions: 3 interactions with chain H Metal complexes: H:E.268, H:E.268, H:H.271

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ruzheinikov, S.N. et al., Glycerol dehydrogenase. structure, specificity, and mechanism of a family III polyol dehydrogenase. Structure (2001)

Release Date

2001-10-03

Peptides

glycerol dehydrogenase: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

glycerol dehydrogenase

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