SMTL ID : 1jqk.3 (2 other biounits)

Crystal structure of carbon monoxide dehydrogenase from Rhodospirillum rubrum

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

2 x FE2: FE (II) ION(Non-covalent)

FE2.1: 4 residues within 4Å: Chain A: H.265, C.300, C.531 Ligands: WCC.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.265, A:C.300, A:C.531 FE2.6: 4 residues within 4Å: Chain B: H.265, C.300, C.531 Ligands: WCC.8 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.265, B:C.300, B:C.531

3 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.2: 9 residues within 4Å: Chain A: C.41, G.44, C.49, R.51, R.59 Chain B: C.41, G.44, C.49, R.51 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A, Metal complexes: B:C.41, B:C.49, A:C.41, A:C.49 SF4.3: 12 residues within 4Å: Chain A: C.50, I.52, C.53, K.55, G.56, C.58, G.70, V.71, C.72, I.79, R.82, V.203 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.50, A:C.53, A:C.58, A:C.72 SF4.7: 12 residues within 4Å: Chain B: C.50, I.52, C.53, K.55, G.56, C.58, G.70, V.71, C.72, I.79, R.82, V.203 4 PLIP interactions: 4 interactions with chain B, Metal complexes: B:C.50, B:C.53, B:C.58, B:C.72

2 x WCC: FE(3)-NI(1)-S(4) CLUSTER(Non-covalent)

WCC.4: 13 residues within 4Å: Chain A: H.265, C.300, Y.317, C.338, G.450, C.451, C.481, C.531, M.565, S.566, K.568 Ligands: FE2.1, UNX.5 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.338, A:C.451, A:C.481, A:C.531 WCC.8: 13 residues within 4Å: Chain B: H.265, C.300, Y.317, C.338, G.450, C.451, C.481, C.531, M.565, S.566, K.568 Ligands: FE2.6, UNX.9 4 PLIP interactions: 4 interactions with chain B, Metal complexes: B:C.338, B:C.451, B:C.481, B:C.531

2 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.5: 2 residues within 4Å: Chain A: C.531 Ligands: WCC.4 No protein-ligand interaction detected (PLIP) UNX.9: 2 residues within 4Å: Chain B: C.531 Ligands: WCC.8 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Drennan, C.L. et al., Life on carbon monoxide: X-ray structure of Rhodospirillum rubrum Ni-Fe-S carbon monoxide dehydrogenase. Proc.Natl.Acad.Sci.USA (2001)

Release Date

2001-10-17

Peptides

carbon monoxide dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

carbon monoxide dehydrogenase

Related Entries With Identical Sequence