SMTL ID : 1jri.2 (1 other biounit)

The Crystal Structure of an Sm-like Archaeal Protein with Two Heptamers in the Asymmetric Unit.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-heptamer

Ligands

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: D.44, L.45 Chain G: Q.12 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.45 EDO.2: 3 residues within 4Å: Chain A: D.16, G.19, N.20 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.16 EDO.3: 5 residues within 4Å: Chain A: R.81 Chain B: N.52, D.53, G.67, T.68 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.53, B:D.53, B:T.68 EDO.5: 5 residues within 4Å: Chain E: Q.12, R.13, P.14, L.15 Chain F: D.44 3 PLIP interactions: 1 interactions with chain F, 2 interactions with chain E Hydrogen bonds: F:D.44, E:R.13, E:L.15 EDO.6: 2 residues within 4Å: Chain F: V.62, R.65 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:R.65 EDO.7: 5 residues within 4Å: Chain F: V.77 Chain G: L.30, K.31, R.34, N.75 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:K.31 EDO.8: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) EDO.9: 6 residues within 4Å: Chain A: T.68 Chain G: A.17, S.21, I.79, S.80, R.81 2 PLIP interactions: 2 interactions with chain G Hydrogen bonds: G:S.21, G:I.79

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 2 residues within 4Å: Chain E: S.21, R.81 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mura, C. et al., The oligomerization and ligand-binding properties of Sm-like archaeal proteins (SmAPs). Protein Sci. (2003)

Release Date

2002-02-13

Peptides

Sm-like Archaeal Protein 1 (SmAP1): ABCDEFG

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
I

C
J

D
K

E
L

F
M

G
N

Sm-like Archaeal Protein 1 (SmAP1)

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