SMTL ID : 1jvs.1

Crystal structure of 1-deoxy-D-xylulose 5-phosphate reductoisomerase; a target enzyme for antimalarial drugs

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: E.152, G.185, S.186, H.209, S.222, N.227, K.228 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.186 Water bridges: A:E.152, A:E.152, A:G.187, A:S.222 Salt bridges: A:H.209, A:K.228 SO4.3: 7 residues within 4Å: Chain B: E.152, G.185, S.186, H.209, S.222, N.227, K.228 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:E.152, B:S.186, B:N.227 Water bridges: B:G.187, B:S.222, B:S.254 Salt bridges: B:H.209, B:K.228

2 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.2: 21 residues within 4Å: Chain A: G.8, S.9, T.10, G.11, S.12, I.13, A.35, G.36, K.37, N.38, D.57, A.100, I.101, V.102, A.105, A.123, N.124, K.125, E.126, D.150, M.276 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:I.13, A:D.150 Hydrogen bonds: A:G.8, A:T.10, A:T.10, A:T.10, A:G.11, A:S.12, A:I.13, A:G.36, A:K.37, A:N.38, A:D.57, A:V.102, A:N.124, A:K.125 Water bridges: A:G.14, A:N.38, A:N.38 NDP.4: 21 residues within 4Å: Chain B: G.8, S.9, T.10, G.11, S.12, I.13, A.35, G.36, K.37, N.38, D.57, A.100, I.101, V.102, A.105, A.123, N.124, K.125, E.126, D.150, M.276 17 PLIP interactions: 17 interactions with chain B Hydrophobic interactions: B:I.13 Hydrogen bonds: B:G.8, B:T.10, B:T.10, B:T.10, B:G.11, B:S.12, B:I.13, B:G.36, B:K.37, B:N.38, B:D.57, B:I.101, B:V.102, B:N.124, B:K.125 Water bridges: B:G.14

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yajima, S. et al., Crystal structure of 1-deoxy-D-xylulose 5-phosphate reductoisomerase complexed with cofactors: implications of a flexible loop movement upon substrate binding. J.Biochem. (2002)

Release Date

2002-10-09

Peptides

1-deoxy-D-xylulose 5-phosphate reductoisomerase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

1-deoxy-D-xylulose 5-phosphate reductoisomerase