SMTL ID : 1jw8.1 (2 other biounits)

1.3 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF P6 FORM OF MYOGLOBIN

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: T.52, E.53, A.54 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.53, A:A.54 SO4.2: 2 residues within 4Å: Chain A: A.16, K.17 3 PLIP interactions: 3 interactions with chain A Water bridges: A:H.13, A:K.17 Salt bridges: A:K.17 SO4.3: 3 residues within 4Å: Chain A: G.125, A.126, D.127 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.126, A:D.127 Water bridges: A:G.125, A:G.125, A:A.128

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.4: 18 residues within 4Å: Chain A: T.40, K.43, F.44, R.46, H.65, T.68, V.69, A.72, L.90, S.93, H.94, H.98, I.100, Y.104, L.105, I.108, F.139 Ligands: CMO.5 27 PLIP interactions: 26 interactions with chain A, 1 Ligand-Ligand interactions Hydrophobic interactions: A:F.44, A:F.44, A:F.44, A:T.68, A:V.69, A:V.69, A:A.72, A:L.90, A:L.90, A:I.100, A:Y.104, A:I.108, A:F.139, A:F.139 Hydrogen bonds: A:S.93 Water bridges: A:R.46, A:H.65, A:P.89, A:S.93 Salt bridges: A:R.46, A:H.65, A:H.94, A:H.98 pi-Stacking: A:H.94, A:H.98 Metal complexes: A:H.94, CMO.5

1 x CMO: CARBON MONOXIDE(Non-functional Binders)

CMO.5: 5 residues within 4Å: Chain A: F.44, H.65, V.69, H.94 Ligands: HEM.4 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kondrashov, D.A. et al., Sampling of the native conformational ensemble of myoglobin via structures in different crystalline environments. Proteins (2008)

Release Date

2001-10-10

Peptides

MYOGLOBIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

MYOGLOBIN

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