- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.67 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x CO: COBALT (II) ION(Non-covalent)
- 8 x HG: MERCURY (II) ION(Non-covalent)
HG.2: 5 residues within 4Å:- Chain A: I.12, C.88, Y.104, A.114, C.118
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:C.88, A:A.114, A:C.118
HG.7: 6 residues within 4Å:- Chain B: I.12, C.88, M.92, Y.104, A.114, C.118
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:C.88, B:A.114, B:C.118
HG.11: 5 residues within 4Å:- Chain C: C.88, M.92, Y.104, A.114, C.118
3 PLIP interactions:3 interactions with chain C- Metal complexes: C:C.88, C:A.114, C:C.118
HG.16: 5 residues within 4Å:- Chain D: C.88, M.92, Y.104, A.114, C.118
3 PLIP interactions:3 interactions with chain D- Metal complexes: D:C.88, D:A.114, D:C.118
HG.19: 4 residues within 4Å:- Chain E: C.88, Y.104, A.114, C.118
2 PLIP interactions:2 interactions with chain E- Metal complexes: E:C.88, E:C.118
HG.23: 5 residues within 4Å:- Chain F: C.88, M.92, Y.104, A.114, C.118
3 PLIP interactions:3 interactions with chain F- Metal complexes: F:C.88, F:A.114, F:C.118
HG.27: 5 residues within 4Å:- Chain G: C.88, M.92, Y.104, A.114, C.118
3 PLIP interactions:3 interactions with chain G- Metal complexes: G:C.88, G:A.114, G:C.118
HG.31: 5 residues within 4Å:- Chain H: C.88, M.92, Y.104, A.114, C.118
2 PLIP interactions:2 interactions with chain H- Metal complexes: H:C.88, H:C.118
- 12 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 6 residues within 4Å:- Chain A: D.14, S.58, G.59, L.82, K.84, V.110
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:D.14, A:G.59
- Water bridges: A:V.15, A:D.16, A:D.16
- Salt bridges: A:K.84
SO4.4: 3 residues within 4Å:- Chain A: T.167, A.168, Q.169
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:A.168, A:Q.169
SO4.8: 6 residues within 4Å:- Chain B: D.14, S.58, G.59, K.84, V.110
- Ligands: CO.6
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:D.14, B:G.59
- Water bridges: B:V.15, B:D.16, B:R.60, B:R.60
- Salt bridges: B:K.84
SO4.9: 3 residues within 4Å:- Chain B: T.167, A.168, Q.169
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:T.167, B:T.167, B:A.168, B:Q.169
SO4.12: 5 residues within 4Å:- Chain C: D.14, S.58, G.59, K.84, V.110
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:D.14, C:G.59
- Water bridges: C:V.15, C:D.16, C:D.16
- Salt bridges: C:K.84
SO4.17: 7 residues within 4Å:- Chain D: D.14, S.58, G.59, R.60, L.82, K.84, V.110
10 PLIP interactions:10 interactions with chain D- Hydrogen bonds: D:D.14, D:G.59
- Water bridges: D:V.15, D:D.16, D:D.16, D:R.60, D:R.60, D:R.60
- Salt bridges: D:R.60, D:K.84
SO4.20: 6 residues within 4Å:- Chain E: D.14, S.58, G.59, L.82, K.84, V.110
6 PLIP interactions:6 interactions with chain E- Hydrogen bonds: E:D.14, E:G.59
- Water bridges: E:D.16, E:D.16, E:D.16
- Salt bridges: E:K.84
SO4.21: 3 residues within 4Å:- Chain E: T.167, A.168, Q.169
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:A.168, E:Q.169
SO4.24: 6 residues within 4Å:- Chain F: D.14, S.58, G.59, L.82, K.84, V.110
8 PLIP interactions:8 interactions with chain F- Hydrogen bonds: F:D.14, F:G.59
- Water bridges: F:D.16, F:D.16, F:D.16, F:D.16, F:D.16
- Salt bridges: F:K.84
SO4.25: 3 residues within 4Å:- Chain F: T.167, A.168, Q.169
2 PLIP interactions:2 interactions with chain F- Hydrogen bonds: F:A.168, F:Q.169
SO4.28: 7 residues within 4Å:- Chain G: D.14, S.58, G.59, R.60, L.82, K.84, V.110
10 PLIP interactions:9 interactions with chain G, 1 interactions with chain E- Hydrogen bonds: G:D.14, G:G.59
- Water bridges: G:D.16, G:D.16, G:D.16, G:R.60, G:R.60, E:Q.180
- Salt bridges: G:R.60, G:K.84
SO4.32: 7 residues within 4Å:- Chain H: D.14, S.58, G.59, R.60, L.82, K.84, V.110
10 PLIP interactions:10 interactions with chain H- Hydrogen bonds: H:D.14, H:G.59
- Water bridges: H:D.16, H:D.16, H:D.16, H:R.60, H:R.60, H:R.60
- Salt bridges: H:R.60, H:K.84
- 3 x GOL: GLYCEROL(Non-functional Binders)
GOL.5: 3 residues within 4Å:- Chain A: D.90, K.93, Q.94
No protein-ligand interaction detected (PLIP)GOL.14: 3 residues within 4Å:- Chain C: D.90, K.93, Q.94
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:Q.94
GOL.29: 3 residues within 4Å:- Chain G: D.90, K.93, Q.94
2 PLIP interactions:2 interactions with chain G- Hydrogen bonds: G:Q.94, G:Q.94
- 2 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
MES.13: 9 residues within 4Å:- Chain A: Q.23, H.25, I.33
- Chain B: Q.23
- Chain C: Q.23, I.33
- Chain D: Q.23, H.25, I.33
6 PLIP interactions:1 interactions with chain A, 1 interactions with chain C, 2 interactions with chain D, 2 interactions with chain B- Hydrogen bonds: A:Q.23, C:Q.23, D:Q.23, B:Q.23
- Water bridges: D:D.21, B:Q.23
MES.33: 8 residues within 4Å:- Chain E: Q.23, H.25
- Chain F: Q.23
- Chain G: Q.23, H.25
- Chain H: Q.23, H.25, I.33
5 PLIP interactions:1 interactions with chain H, 1 interactions with chain E, 1 interactions with chain G, 2 interactions with chain F- Hydrogen bonds: H:Q.23, E:Q.23, G:Q.23, F:Q.23
- Water bridges: F:Q.23
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Parsons, J.F. et al., From structure to function: YrbI from Haemophilus influenzae (HI1679) is a phosphatase. Proteins (2002)
- Release Date
- 2002-02-27
- Peptides
- deoxy-D-mannose-octulosonate 8-phosphate phosphatase: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
H
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.67 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x CO: COBALT (II) ION(Non-covalent)
- 8 x HG: MERCURY (II) ION(Non-covalent)
- 12 x SO4: SULFATE ION(Non-functional Binders)
- 3 x GOL: GLYCEROL(Non-functional Binders)
- 2 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Parsons, J.F. et al., From structure to function: YrbI from Haemophilus influenzae (HI1679) is a phosphatase. Proteins (2002)
- Release Date
- 2002-02-27
- Peptides
- deoxy-D-mannose-octulosonate 8-phosphate phosphatase: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
H