SMTL ID : 1k7v.2 (1 other biounit)

Crystal Structure Analysis of crosslinked-WGA3/GlcNAcbeta1,6Galbeta1,4Glc

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x BGC- GAL- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-6)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose

BGC-GAL-NAG.1: 7 residues within 4Å: Chain A: S.62, Y.64, H.66, E.72, Y.73 Chain B: S.114, E.115 9 PLIP interactions: 6 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:Y.64, A:Y.64, A:S.62, A:Y.73, B:S.114, B:E.115 Hydrophobic interactions: A:E.72, A:Y.73 Water bridges: A:S.43, A:S.43, B:S.114 BGC-GAL-NAG.2: 7 residues within 4Å: Chain A: S.114, E.115 Chain B: S.62, Y.64, H.66, E.72, Y.73 9 PLIP interactions: 4 interactions with chain A, 5 interactions with chain B Hydrogen bonds: A:S.114, A:S.114, A:E.115, A:E.115, B:S.62, B:Y.73 Water bridges: B:Y.64, A:S.114, B:Y.73 Hydrophobic interactions: B:E.72, B:Y.73

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Muraki, M. et al., Interactions of wheat-germ agglutinin with GlcNAc beta 1,6Gal sequence. Biochim.Biophys.Acta (2002)

Release Date

2002-04-03

Peptides

agglutinin isolectin 3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

agglutinin isolectin 3

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