- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.1: 10 residues within 4Å:- Chain A: P.19, G.20, R.24, R.87, V.88, G.89, S.90, E.181
- Chain D: R.43
- Ligands: FM2.2
7 PLIP interactions:1 interactions with chain D, 6 interactions with chain A- Salt bridges: D:R.43, A:R.24, A:R.87
- Hydrogen bonds: A:G.20, A:S.90, A:E.181
- Water bridges: A:S.90
PO4.3: 10 residues within 4Å:- Chain B: P.19, G.20, R.24, R.87, V.88, G.89, S.90, E.181
- Chain E: R.43
- Ligands: FM2.4
7 PLIP interactions:1 interactions with chain E, 6 interactions with chain B- Salt bridges: E:R.43, B:R.24, B:R.87
- Hydrogen bonds: B:G.20, B:S.90, B:E.181
- Water bridges: B:S.90
PO4.5: 10 residues within 4Å:- Chain C: P.19, G.20, R.24, R.87, V.88, G.89, S.90, E.181
- Chain F: R.43
- Ligands: FM2.6
7 PLIP interactions:6 interactions with chain C, 1 interactions with chain F- Hydrogen bonds: C:G.20, C:S.90, C:E.181
- Water bridges: C:S.90
- Salt bridges: C:R.24, C:R.87, F:R.43
PO4.7: 9 residues within 4Å:- Chain A: R.43
- Chain D: P.19, G.20, R.24, R.87, V.88, G.89, S.90
- Ligands: FM1.8
6 PLIP interactions:5 interactions with chain D, 1 interactions with chain A- Hydrogen bonds: D:G.20, D:D.21, D:S.90
- Salt bridges: D:R.24, D:R.87, A:R.43
PO4.9: 9 residues within 4Å:- Chain B: R.43
- Chain E: P.19, G.20, R.24, R.87, V.88, G.89, S.90
- Ligands: FM1.10
6 PLIP interactions:5 interactions with chain E, 1 interactions with chain B- Hydrogen bonds: E:G.20, E:S.90
- Water bridges: E:S.90
- Salt bridges: E:R.24, E:R.87, B:R.43
PO4.11: 9 residues within 4Å:- Chain C: R.43
- Chain F: P.19, G.20, R.24, R.87, V.88, G.89, S.90
- Ligands: FM1.12
7 PLIP interactions:6 interactions with chain F, 1 interactions with chain C- Hydrogen bonds: F:G.20, F:S.90, F:E.181
- Water bridges: F:S.90
- Salt bridges: F:R.24, F:R.87, C:R.43
- 3 x FM2: 2-(7-AMINO-6-METHYL-3H-PYRAZOLO[4,3-D]PYRIMIDIN-3-YL)-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3,4-DIOL(Non-covalent)
FM2.2: 16 residues within 4Å:- Chain A: M.64, R.87, S.90, C.91, G.92, F.159, V.178, E.179, M.180, E.181, S.203, D.204, R.217
- Chain D: H.4, R.43
- Ligands: PO4.1
12 PLIP interactions:2 interactions with chain D, 10 interactions with chain A- Hydrogen bonds: D:H.4, D:R.43, A:R.87, A:S.90, A:M.180, A:E.181, A:S.203, A:D.204, A:D.204, A:R.217
- Water bridges: A:S.90, A:S.90
FM2.4: 16 residues within 4Å:- Chain B: M.64, R.87, S.90, C.91, G.92, F.159, V.178, E.179, M.180, E.181, S.203, D.204, R.217
- Chain E: H.4, R.43
- Ligands: PO4.3
12 PLIP interactions:2 interactions with chain E, 10 interactions with chain B- Hydrogen bonds: E:H.4, E:R.43, B:R.87, B:S.90, B:M.180, B:E.181, B:S.203, B:D.204, B:D.204, B:R.217
- Water bridges: B:S.90, B:S.90
FM2.6: 15 residues within 4Å:- Chain C: M.64, R.87, S.90, C.91, G.92, F.159, V.178, E.179, M.180, E.181, S.203, D.204
- Chain F: H.4, R.43
- Ligands: PO4.5
11 PLIP interactions:9 interactions with chain C, 2 interactions with chain F- Hydrogen bonds: C:R.87, C:S.90, C:M.180, C:E.181, C:S.203, C:D.204, C:D.204, F:H.4, F:R.43
- Water bridges: C:R.217, C:R.217
- 3 x FM1: 2-HYDROXYMETHYL-5-(7-METHYLAMINO-3H-PYRAZOLO[4,3-D]PYRIMIDIN-3-YL)-TETRAHYDRO-FURAN-3,4-DIOL(Non-covalent)
FM1.8: 16 residues within 4Å:- Chain A: H.4, R.43
- Chain D: M.64, R.87, S.90, C.91, G.92, F.159, V.178, E.179, M.180, E.181, S.203, D.204, I.206
- Ligands: PO4.7
11 PLIP interactions:9 interactions with chain D, 2 interactions with chain A- Hydrogen bonds: D:R.87, D:S.90, D:M.180, D:E.181, D:S.203, D:D.204, D:D.204, A:H.4, A:R.43
- Water bridges: D:S.90, D:S.90
FM1.10: 16 residues within 4Å:- Chain B: H.4, R.43
- Chain E: M.64, R.87, S.90, C.91, G.92, F.159, V.178, E.179, M.180, E.181, S.203, D.204, I.206
- Ligands: PO4.9
11 PLIP interactions:9 interactions with chain E, 2 interactions with chain B- Hydrogen bonds: E:R.87, E:S.90, E:M.180, E:E.181, E:S.203, E:D.204, E:D.204, B:H.4, B:R.43
- Water bridges: E:S.90, E:S.90
FM1.12: 15 residues within 4Å:- Chain C: H.4, R.43
- Chain F: M.64, R.87, S.90, C.91, G.92, F.159, V.178, E.179, M.180, E.181, S.203, D.204
- Ligands: PO4.11
11 PLIP interactions:9 interactions with chain F, 2 interactions with chain C- Hydrogen bonds: F:R.87, F:S.90, F:M.180, F:E.181, F:S.203, F:D.204, F:D.204, C:H.4, C:R.43
- Water bridges: F:S.90, F:S.90
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Koellner, G. et al., Open and closed conformation of the E. coli purine nucleoside phosphorylase active center and implications for the catalytic mechanism. J.Mol.Biol. (2002)
- Release Date
- 2001-11-28
- Peptides
- PURINE NUCLEOSIDE PHOSPHORYLASE: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
- 3 x FM2: 2-(7-AMINO-6-METHYL-3H-PYRAZOLO[4,3-D]PYRIMIDIN-3-YL)-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3,4-DIOL(Non-covalent)
- 3 x FM1: 2-HYDROXYMETHYL-5-(7-METHYLAMINO-3H-PYRAZOLO[4,3-D]PYRIMIDIN-3-YL)-TETRAHYDRO-FURAN-3,4-DIOL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Koellner, G. et al., Open and closed conformation of the E. coli purine nucleoside phosphorylase active center and implications for the catalytic mechanism. J.Mol.Biol. (2002)
- Release Date
- 2001-11-28
- Peptides
- PURINE NUCLEOSIDE PHOSPHORYLASE: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F