SMTL ID : 1kiz.1

D100E trichodiene synthase complexed with pyrophosphate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: Y.113, W.128, N.132, F.135, I.151 Chain B: F.114 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.113, A:N.132 EDO.2: 4 residues within 4Å: Chain A: M.73, V.191, M.221, Y.295 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.295 EDO.6: 6 residues within 4Å: Chain A: F.114 Chain B: Y.113, W.128, N.132, F.135, I.151 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.113, B:Y.113, B:N.132 EDO.7: 3 residues within 4Å: Chain B: M.73, M.221, Y.295 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.295, B:Y.295

2 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 5 residues within 4Å: Chain B: N.225, D.226, S.229, E.233 Ligands: POP.5 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:S.229 MG.4: 2 residues within 4Å: Chain B: E.100 Ligands: POP.5 No protein-ligand interaction detected (PLIP)

1 x POP: PYROPHOSPHATE 2-(Non-covalent)

POP.5: 9 residues within 4Å: Chain B: E.100, R.182, N.225, S.229, K.232, R.304, Y.305 Ligands: MG.3, MG.4 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:E.100, B:N.225, B:N.225, B:S.229, B:R.304, B:Y.305 Salt bridges: B:R.182, B:K.232

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rynkiewicz, M.J. et al., X-ray crystal structures of D100E trichodiene synthase and its pyrophosphate complex reveal the basis for terpene product diversity. Biochemistry (2002)

Release Date

2002-03-13

Peptides

trichodiene synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

trichodiene synthase

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