SMTL ID : 1kj4.3 (2 other biounits)

SUBSTRATE SHAPE DETERMINES SPECIFICITY OF RECOGNITION RECOGNITION FOR HIV-1 PROTEASE: ANALYSIS OF CRYSTAL STRUCTURES OF SIX SUBSTRATE COMPLEXES

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-16-8-mer

Ligands

48 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 3 residues within 4Å: Chain A: W.6, K.7, R.8 Ligand excluded by PLIP ACT.2: 4 residues within 4Å: Chain A: G.73, T.74, N.88, Q.92 Ligand excluded by PLIP ACT.3: 3 residues within 4Å: Chain A: R.14 Chain J: P.1, H.69 Ligand excluded by PLIP ACT.4: 2 residues within 4Å: Chain B: R.8 Ligands: ACT.7 Ligand excluded by PLIP ACT.5: 3 residues within 4Å: Chain B: H.69, K.70 Chain S: H.69 Ligand excluded by PLIP ACT.6: 4 residues within 4Å: Chain B: T.4, W.6, K.7 Chain N: P.1 Ligand excluded by PLIP ACT.7: 5 residues within 4Å: Chain B: R.8 Chain D: R.8, L.10 Ligands: ACT.4, ACT.12 Ligand excluded by PLIP ACT.8: 5 residues within 4Å: Chain C: G.73, T.74, N.88, Q.92 Chain N: G.17 Ligand excluded by PLIP ACT.9: 3 residues within 4Å: Chain C: R.87 Chain D: W.6 Ligands: ACT.12 Ligand excluded by PLIP ACT.10: 1 residues within 4Å: Chain D: H.69 Ligand excluded by PLIP ACT.11: 2 residues within 4Å: Chain D: R.14, G.17 Ligand excluded by PLIP ACT.12: 4 residues within 4Å: Chain B: R.8 Chain D: R.8 Ligands: ACT.7, ACT.9 Ligand excluded by PLIP ACT.13: 3 residues within 4Å: Chain G: W.6, K.7, R.8 Ligand excluded by PLIP ACT.14: 4 residues within 4Å: Chain G: G.73, T.74, N.88, Q.92 Ligand excluded by PLIP ACT.15: 3 residues within 4Å: Chain D: P.1, H.69 Chain G: R.14 Ligand excluded by PLIP ACT.16: 2 residues within 4Å: Chain H: R.8 Ligands: ACT.19 Ligand excluded by PLIP ACT.17: 3 residues within 4Å: Chain H: H.69, K.70 Chain M: H.69 Ligand excluded by PLIP ACT.18: 4 residues within 4Å: Chain H: T.4, W.6, K.7 Chain T: P.1 Ligand excluded by PLIP ACT.19: 5 residues within 4Å: Chain H: R.8 Chain J: R.8, L.10 Ligands: ACT.16, ACT.24 Ligand excluded by PLIP ACT.20: 5 residues within 4Å: Chain I: G.73, T.74, N.88, Q.92 Chain T: G.17 Ligand excluded by PLIP ACT.21: 3 residues within 4Å: Chain I: R.87 Chain J: W.6 Ligands: ACT.24 Ligand excluded by PLIP ACT.22: 1 residues within 4Å: Chain J: H.69 Ligand excluded by PLIP ACT.23: 2 residues within 4Å: Chain J: R.14, G.17 Ligand excluded by PLIP ACT.24: 4 residues within 4Å: Chain H: R.8 Chain J: R.8 Ligands: ACT.19, ACT.21 Ligand excluded by PLIP ACT.25: 3 residues within 4Å: Chain M: W.6, K.7, R.8 Ligand excluded by PLIP ACT.26: 4 residues within 4Å: Chain M: G.73, T.74, N.88, Q.92 Ligand excluded by PLIP ACT.27: 3 residues within 4Å: Chain M: R.14 Chain V: P.1, H.69 Ligand excluded by PLIP ACT.28: 2 residues within 4Å: Chain N: R.8 Ligands: ACT.31 Ligand excluded by PLIP ACT.29: 3 residues within 4Å: Chain G: H.69 Chain N: H.69, K.70 Ligand excluded by PLIP ACT.30: 4 residues within 4Å: Chain B: P.1 Chain N: T.4, W.6, K.7 Ligand excluded by PLIP ACT.31: 5 residues within 4Å: Chain N: R.8 Chain P: R.8, L.10 Ligands: ACT.28, ACT.36 Ligand excluded by PLIP ACT.32: 5 residues within 4Å: Chain B: G.17 Chain O: G.73, T.74, N.88, Q.92 Ligand excluded by PLIP ACT.33: 3 residues within 4Å: Chain O: R.87 Chain P: W.6 Ligands: ACT.36 Ligand excluded by PLIP ACT.34: 1 residues within 4Å: Chain P: H.69 Ligand excluded by PLIP ACT.35: 2 residues within 4Å: Chain P: R.14, G.17 Ligand excluded by PLIP ACT.36: 4 residues within 4Å: Chain N: R.8 Chain P: R.8 Ligands: ACT.31, ACT.33 Ligand excluded by PLIP ACT.37: 3 residues within 4Å: Chain S: W.6, K.7, R.8 Ligand excluded by PLIP ACT.38: 4 residues within 4Å: Chain S: G.73, T.74, N.88, Q.92 Ligand excluded by PLIP ACT.39: 3 residues within 4Å: Chain P: P.1, H.69 Chain S: R.14 Ligand excluded by PLIP ACT.40: 2 residues within 4Å: Chain T: R.8 Ligands: ACT.43 Ligand excluded by PLIP ACT.41: 3 residues within 4Å: Chain A: H.69 Chain T: H.69, K.70 Ligand excluded by PLIP ACT.42: 4 residues within 4Å: Chain H: P.1 Chain T: T.4, W.6, K.7 Ligand excluded by PLIP ACT.43: 5 residues within 4Å: Chain T: R.8 Chain V: R.8, L.10 Ligands: ACT.40, ACT.48 Ligand excluded by PLIP ACT.44: 5 residues within 4Å: Chain H: G.17 Chain U: G.73, T.74, N.88, Q.92 Ligand excluded by PLIP ACT.45: 3 residues within 4Å: Chain U: R.87 Chain V: W.6 Ligands: ACT.48 Ligand excluded by PLIP ACT.46: 1 residues within 4Å: Chain V: H.69 Ligand excluded by PLIP ACT.47: 2 residues within 4Å: Chain V: R.14, G.17 Ligand excluded by PLIP ACT.48: 4 residues within 4Å: Chain T: R.8 Chain V: R.8 Ligands: ACT.43, ACT.45 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Prabu-Jeyabalan, M. et al., Substrate shape determines specificity of recognition for HIV-1 protease: analysis of crystal structures of six substrate complexes. Structure (2002)

Release Date

2002-03-06

Peptides

POL polyprotein: ABCDGHIJMNOPSTUV
gag polyprotein: EFKLQRWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

G
A

H
B

I
C

J
D

M
A

N
B

O
C

P
D

S
A

T
B

U
C

V
D

E
P

F
S

K
P

L
S

Q
P

R
S

W
P

X
S

POL polyprotein

gag polyprotein

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