SMTL ID : 1kqj.1

Crystal Structure of a Mutant of MutY Catalytic Domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: P.69, L.70 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.70 Water bridges: A:D.71

1 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.2: 7 residues within 4Å: Chain A: R.147, C.192, H.199, C.202, Q.205, C.208, A.211 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.192, A:H.199, A:C.202, A:C.208

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain A: R.58, F.59, D.64, A.68 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.58, A:R.58 GOL.4: 7 residues within 4Å: Chain A: P.30, Y.31, T.61, V.62, G.102, K.103, F.104 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:V.62, A:G.102, A:F.104 Water bridges: A:T.61, A:G.102 GOL.5: 3 residues within 4Å: Chain A: R.87, N.88, K.91 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.87, A:N.88, A:N.88, A:K.91

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Messick, T.E. et al., Noncysteinyl coordination to the [4Fe-4S]2+ cluster of the DNA repair adenine glycosylase MutY introduced via site-directed mutagenesis. Structural characterization of an unusual histidinyl-coordinated cluster. Biochemistry (2002)

Release Date

2002-04-10

Peptides

A/G-SPECIFIC ADENINE GLYCOSYLASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

A/G-SPECIFIC ADENINE GLYCOSYLASE