- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-10-mer
- Ligands
- 10 x PO4: PHOSPHATE ION(Non-functional Binders)
- 10 x RBF: RIBOFLAVIN(Non-covalent)
RBF.2: 15 residues within 4Å:- Chain A: W.27, G.61, S.62, W.63, E.64, V.86, L.87, I.88, H.94, I.98
- Chain E: I.118, L.119, H.142, W.146
- Ligands: PO4.1
12 PLIP interactions:10 interactions with chain A, 2 interactions with chain E- Hydrophobic interactions: A:W.27, E:W.146
- Hydrogen bonds: A:S.62, A:W.63, A:V.86, A:I.88, E:L.119
- Water bridges: A:V.86
- pi-Stacking: A:W.27, A:W.27, A:W.27, A:H.94
RBF.4: 14 residues within 4Å:- Chain A: I.118, L.119, H.142, W.146
- Chain B: W.27, G.61, S.62, W.63, E.64, V.86, L.87, I.88, H.94
- Ligands: PO4.3
15 PLIP interactions:13 interactions with chain B, 2 interactions with chain A- Hydrophobic interactions: B:W.27, B:W.27, A:W.146
- Hydrogen bonds: B:S.62, B:W.63, B:W.63, B:E.64, B:V.86, B:I.88, A:L.119
- Water bridges: B:V.86
- pi-Stacking: B:W.27, B:W.27, B:W.27, B:H.94
RBF.6: 15 residues within 4Å:- Chain B: I.118, L.119, H.142, W.146
- Chain C: W.27, G.61, S.62, W.63, E.64, V.86, L.87, I.88, H.94, I.98
- Ligands: PO4.5
13 PLIP interactions:2 interactions with chain B, 11 interactions with chain C- Hydrophobic interactions: B:W.146, C:W.27
- Hydrogen bonds: B:L.119, C:S.62, C:W.63, C:E.64, C:V.86, C:I.88
- Water bridges: C:V.86
- pi-Stacking: C:W.27, C:W.27, C:W.27, C:H.94
RBF.8: 15 residues within 4Å:- Chain C: I.118, L.119, H.142, W.146
- Chain D: W.27, G.61, S.62, W.63, E.64, V.86, L.87, I.88, H.94, I.98
- Ligands: PO4.7
14 PLIP interactions:12 interactions with chain D, 2 interactions with chain C- Hydrophobic interactions: D:W.27, D:W.27, C:W.146
- Hydrogen bonds: D:S.62, D:W.63, D:E.64, D:V.86, D:I.88, C:L.119
- Water bridges: D:V.86
- pi-Stacking: D:W.27, D:W.27, D:W.27, D:H.94
RBF.10: 15 residues within 4Å:- Chain D: I.118, L.119, H.142, W.146
- Chain E: W.27, G.61, S.62, W.63, E.64, V.86, L.87, I.88, H.94, I.98
- Ligands: PO4.9
14 PLIP interactions:2 interactions with chain D, 12 interactions with chain E- Hydrophobic interactions: D:W.146, E:W.27, E:W.27
- Hydrogen bonds: D:L.119, E:S.62, E:W.63, E:E.64, E:V.86, E:I.88
- Water bridges: E:V.86
- pi-Stacking: E:W.27, E:W.27, E:W.27, E:H.94
RBF.12: 15 residues within 4Å:- Chain F: W.27, G.61, S.62, W.63, E.64, V.86, L.87, I.88, H.94, I.98
- Chain J: I.118, L.119, H.142, W.146
- Ligands: PO4.11
12 PLIP interactions:10 interactions with chain F, 2 interactions with chain J- Hydrophobic interactions: F:W.27, J:W.146
- Hydrogen bonds: F:S.62, F:W.63, F:V.86, F:I.88, J:L.119
- Water bridges: F:V.86
- pi-Stacking: F:W.27, F:W.27, F:W.27, F:H.94
RBF.14: 14 residues within 4Å:- Chain F: I.118, L.119, H.142, W.146
- Chain G: W.27, G.61, S.62, W.63, E.64, V.86, L.87, I.88, H.94
- Ligands: PO4.13
15 PLIP interactions:2 interactions with chain F, 13 interactions with chain G- Hydrophobic interactions: F:W.146, G:W.27, G:W.27
- Hydrogen bonds: F:L.119, G:S.62, G:W.63, G:W.63, G:E.64, G:V.86, G:I.88
- Water bridges: G:V.86
- pi-Stacking: G:W.27, G:W.27, G:W.27, G:H.94
RBF.16: 15 residues within 4Å:- Chain G: I.118, L.119, H.142, W.146
- Chain H: W.27, G.61, S.62, W.63, E.64, V.86, L.87, I.88, H.94, I.98
- Ligands: PO4.15
13 PLIP interactions:11 interactions with chain H, 2 interactions with chain G- Hydrophobic interactions: H:W.27, G:W.146
- Hydrogen bonds: H:S.62, H:W.63, H:E.64, H:V.86, H:I.88, G:L.119
- Water bridges: H:V.86
- pi-Stacking: H:W.27, H:W.27, H:W.27, H:H.94
RBF.18: 15 residues within 4Å:- Chain H: I.118, L.119, H.142, W.146
- Chain I: W.27, G.61, S.62, W.63, E.64, V.86, L.87, I.88, H.94, I.98
- Ligands: PO4.17
14 PLIP interactions:12 interactions with chain I, 2 interactions with chain H- Hydrophobic interactions: I:W.27, I:W.27, H:W.146
- Hydrogen bonds: I:S.62, I:W.63, I:E.64, I:V.86, I:I.88, H:L.119
- Water bridges: I:V.86
- pi-Stacking: I:W.27, I:W.27, I:W.27, I:H.94
RBF.20: 15 residues within 4Å:- Chain I: I.118, L.119, H.142, W.146
- Chain J: W.27, G.61, S.62, W.63, E.64, V.86, L.87, I.88, H.94, I.98
- Ligands: PO4.19
14 PLIP interactions:12 interactions with chain J, 2 interactions with chain I- Hydrophobic interactions: J:W.27, J:W.27, I:W.146
- Hydrogen bonds: J:S.62, J:W.63, J:E.64, J:V.86, J:I.88, I:L.119
- Water bridges: J:V.86
- pi-Stacking: J:W.27, J:W.27, J:W.27, J:H.94
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gerhardt, S. et al., The structural basis of riboflavin binding to Schizosaccharomyces pombe 6,7-dimethyl-8-ribityllumazine synthase. J.Mol.Biol. (2002)
- Release Date
- 2002-07-24
- Peptides
- 6,7-Dimethyl-8-ribityllumazine Synthase: ABCDEFGHIJ
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
AG
BH
CI
DJ
E
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-10-mer
- Ligands
- 10 x PO4: PHOSPHATE ION(Non-functional Binders)
- 10 x RBF: RIBOFLAVIN(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gerhardt, S. et al., The structural basis of riboflavin binding to Schizosaccharomyces pombe 6,7-dimethyl-8-ribityllumazine synthase. J.Mol.Biol. (2002)
- Release Date
- 2002-07-24
- Peptides
- 6,7-Dimethyl-8-ribityllumazine Synthase: ABCDEFGHIJ
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
AG
BH
CI
DJ
E