- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- homo-10-mer
- Ligands
- 10 x PO4: PHOSPHATE ION(Non-functional Binders)
- 10 x CRM: 3-[8-((2S,3S,4R)-2,3,4,5-TETRAHYDROXYPENTYL)-2,4,7-TRIOXO-1,3,8-TRIHYDROPTERIDIN-6-YL]PROPANOIC ACID(Non-covalent)
CRM.3: 16 residues within 4Å:- Chain A: W.27, N.28, G.61, S.62, W.63, E.64, V.86, L.87, I.88, H.94, F.95, I.98
- Chain E: I.118, L.119, W.146
- Ligands: PO4.1
14 PLIP interactions:2 interactions with chain E, 12 interactions with chain A- Hydrogen bonds: E:L.119, A:S.62, A:W.63, A:E.64, A:V.86, A:I.88
- Water bridges: E:L.121, A:W.27, A:V.86, A:T.92
- Hydrophobic interactions: A:W.27
- Salt bridges: A:H.94
- pi-Stacking: A:W.27, A:W.27
CRM.4: 16 residues within 4Å:- Chain A: I.118, L.119, W.146
- Chain B: W.27, N.28, G.61, S.62, W.63, E.64, V.86, L.87, I.88, H.94, F.95, I.98
- Ligands: PO4.2
13 PLIP interactions:12 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:W.27
- Hydrogen bonds: B:S.62, B:W.63, B:E.64, B:V.86, B:I.88, A:L.119
- Water bridges: B:V.86, B:V.86, B:G.90
- Salt bridges: B:H.94
- pi-Stacking: B:W.27, B:W.27
CRM.6: 16 residues within 4Å:- Chain B: I.118, L.119, W.146
- Chain C: W.27, N.28, G.61, S.62, W.63, E.64, V.86, L.87, I.88, H.94, F.95, I.98
- Ligands: PO4.5
15 PLIP interactions:13 interactions with chain C, 2 interactions with chain B- Hydrophobic interactions: C:W.27, C:H.94
- Hydrogen bonds: C:S.62, C:W.63, C:E.64, C:V.86, C:I.88, B:L.119
- Water bridges: C:W.27, C:V.86, C:G.90, B:L.121
- Salt bridges: C:H.94
- pi-Stacking: C:W.27, C:W.27
CRM.8: 16 residues within 4Å:- Chain C: I.118, L.119, W.146
- Chain D: W.27, N.28, G.61, S.62, W.63, E.64, V.86, L.87, I.88, H.94, F.95, I.98
- Ligands: PO4.7
13 PLIP interactions:1 interactions with chain C, 12 interactions with chain D- Hydrogen bonds: C:L.119, D:S.62, D:W.63, D:E.64, D:V.86, D:I.88, D:F.95
- Hydrophobic interactions: D:W.27
- Water bridges: D:W.27, D:V.86, D:G.90
- Salt bridges: D:H.94
- pi-Stacking: D:W.27
CRM.10: 16 residues within 4Å:- Chain D: I.118, L.119, W.146
- Chain E: W.27, N.28, G.61, S.62, W.63, E.64, V.86, L.87, I.88, H.94, F.95, I.98
- Ligands: PO4.9
13 PLIP interactions:12 interactions with chain E, 1 interactions with chain D- Hydrophobic interactions: E:W.27
- Hydrogen bonds: E:S.62, E:W.63, E:E.64, E:V.86, E:I.88, D:L.119
- Water bridges: E:W.27, E:V.86, E:T.92
- Salt bridges: E:H.94
- pi-Stacking: E:W.27, E:W.27
CRM.13: 16 residues within 4Å:- Chain F: W.27, N.28, G.61, S.62, W.63, E.64, V.86, L.87, I.88, H.94, F.95, I.98
- Chain J: I.118, L.119, W.146
- Ligands: PO4.11
14 PLIP interactions:2 interactions with chain J, 12 interactions with chain F- Hydrogen bonds: J:L.119, F:S.62, F:W.63, F:E.64, F:V.86, F:I.88
- Water bridges: J:L.121, F:W.27, F:V.86, F:G.90
- Hydrophobic interactions: F:W.27
- Salt bridges: F:H.94
- pi-Stacking: F:W.27, F:W.27
CRM.14: 16 residues within 4Å:- Chain F: I.118, L.119, W.146
- Chain G: W.27, N.28, G.61, S.62, W.63, E.64, V.86, L.87, I.88, H.94, F.95, I.98
- Ligands: PO4.12
13 PLIP interactions:12 interactions with chain G, 1 interactions with chain F- Hydrophobic interactions: G:W.27
- Hydrogen bonds: G:S.62, G:W.63, G:E.64, G:V.86, G:I.88, F:L.119
- Water bridges: G:V.86, G:V.86, G:G.90
- Salt bridges: G:H.94
- pi-Stacking: G:W.27, G:W.27
CRM.16: 16 residues within 4Å:- Chain G: I.118, L.119, W.146
- Chain H: W.27, N.28, G.61, S.62, W.63, E.64, V.86, L.87, I.88, H.94, F.95, I.98
- Ligands: PO4.15
15 PLIP interactions:13 interactions with chain H, 2 interactions with chain G- Hydrophobic interactions: H:W.27, H:H.94
- Hydrogen bonds: H:S.62, H:W.63, H:E.64, H:V.86, H:I.88, G:L.119
- Water bridges: H:W.27, H:V.86, H:G.90, G:L.121
- Salt bridges: H:H.94
- pi-Stacking: H:W.27, H:W.27
CRM.18: 16 residues within 4Å:- Chain H: I.118, L.119, W.146
- Chain I: W.27, N.28, G.61, S.62, W.63, E.64, V.86, L.87, I.88, H.94, F.95, I.98
- Ligands: PO4.17
13 PLIP interactions:12 interactions with chain I, 1 interactions with chain H- Hydrophobic interactions: I:W.27
- Hydrogen bonds: I:S.62, I:W.63, I:E.64, I:V.86, I:I.88, I:F.95, H:L.119
- Water bridges: I:W.27, I:V.86, I:G.90
- Salt bridges: I:H.94
- pi-Stacking: I:W.27
CRM.20: 16 residues within 4Å:- Chain I: I.118, L.119, W.146
- Chain J: W.27, N.28, G.61, S.62, W.63, E.64, V.86, L.87, I.88, H.94, F.95, I.98
- Ligands: PO4.19
13 PLIP interactions:12 interactions with chain J, 1 interactions with chain I- Hydrophobic interactions: J:W.27
- Hydrogen bonds: J:S.62, J:W.63, J:E.64, J:V.86, J:I.88, I:L.119
- Water bridges: J:W.27, J:V.86, J:T.92
- Salt bridges: J:H.94
- pi-Stacking: J:W.27, J:W.27
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gerhardt, S. et al., The structural basis of riboflavin binding to Schizosaccharomyces pombe 6,7-dimethyl-8-ribityllumazine synthase. J.Mol.Biol. (2002)
- Release Date
- 2002-07-24
- Peptides
- 6,7-Dimethyl-8-ribityllumazine Synthase: ABCDEFGHIJ
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
AG
BH
CI
DJ
E
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- homo-10-mer
- Ligands
- 10 x PO4: PHOSPHATE ION(Non-functional Binders)
- 10 x CRM: 3-[8-((2S,3S,4R)-2,3,4,5-TETRAHYDROXYPENTYL)-2,4,7-TRIOXO-1,3,8-TRIHYDROPTERIDIN-6-YL]PROPANOIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gerhardt, S. et al., The structural basis of riboflavin binding to Schizosaccharomyces pombe 6,7-dimethyl-8-ribityllumazine synthase. J.Mol.Biol. (2002)
- Release Date
- 2002-07-24
- Peptides
- 6,7-Dimethyl-8-ribityllumazine Synthase: ABCDEFGHIJ
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
AG
BH
CI
DJ
E