- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-10-mer
- Ligands
- 10 x PO4: PHOSPHATE ION(Non-functional Binders)
- 10 x INI: 5-NITRO-6-RIBITYL-AMINO-2,4(1H,3H)-PYRIMIDINEDIONE(Non-covalent)
INI.2: 14 residues within 4Å:- Chain A: W.27, N.28, G.61, S.62, W.63, E.64, V.86, L.87, I.88, H.94, I.98
- Chain E: I.118, L.119, W.146
12 PLIP interactions:10 interactions with chain A, 2 interactions with chain E- Hydrogen bonds: A:W.27, A:S.62, A:W.63, A:V.86, A:I.88, E:L.119
- Water bridges: A:V.86, A:V.86, A:I.88, A:H.94, E:W.146
- pi-Stacking: A:W.27
INI.4: 15 residues within 4Å:- Chain A: I.118, L.119, W.146
- Chain B: A.25, W.27, N.28, G.61, S.62, W.63, E.64, V.86, L.87, I.88, H.94, I.98
14 PLIP interactions:3 interactions with chain A, 11 interactions with chain B- Hydrogen bonds: A:L.119, B:W.27, B:S.62, B:W.63, B:W.63, B:V.86, B:I.88
- Water bridges: A:L.121, A:W.146, B:V.86, B:V.86, B:I.88, B:H.94
- pi-Stacking: B:W.27
INI.6: 14 residues within 4Å:- Chain B: I.118, L.119, W.146
- Chain C: W.27, N.28, G.61, S.62, W.63, E.64, V.86, L.87, I.88, H.94, I.98
10 PLIP interactions:1 interactions with chain B, 9 interactions with chain C- Hydrogen bonds: B:L.119, C:W.27, C:S.62, C:W.63, C:V.86, C:I.88
- Water bridges: C:V.86, C:I.88, C:H.94
- pi-Stacking: C:W.27
INI.8: 13 residues within 4Å:- Chain C: I.118, L.119
- Chain D: W.27, N.28, G.61, S.62, W.63, E.64, V.86, L.87, I.88, H.94, I.98
11 PLIP interactions:2 interactions with chain C, 9 interactions with chain D- Hydrogen bonds: C:L.119, D:W.27, D:S.62, D:W.63, D:W.63, D:V.86, D:I.88
- Water bridges: C:W.146, D:V.86, D:H.94
- pi-Stacking: D:W.27
INI.10: 14 residues within 4Å:- Chain D: I.118, L.119, W.146
- Chain E: W.27, N.28, G.61, S.62, W.63, E.64, V.86, L.87, I.88, H.94, I.98
9 PLIP interactions:8 interactions with chain E, 1 interactions with chain D- Hydrogen bonds: E:W.27, E:S.62, E:W.63, E:V.86, E:I.88, D:L.119
- Water bridges: E:W.27, E:V.86
- pi-Stacking: E:W.27
INI.12: 14 residues within 4Å:- Chain F: W.27, N.28, G.61, S.62, W.63, E.64, V.86, L.87, I.88, H.94, I.98
- Chain J: I.118, L.119, W.146
12 PLIP interactions:10 interactions with chain F, 2 interactions with chain J- Hydrogen bonds: F:W.27, F:S.62, F:W.63, F:V.86, F:I.88, J:L.119
- Water bridges: F:V.86, F:V.86, F:I.88, F:H.94, J:W.146
- pi-Stacking: F:W.27
INI.14: 15 residues within 4Å:- Chain F: I.118, L.119, W.146
- Chain G: A.25, W.27, N.28, G.61, S.62, W.63, E.64, V.86, L.87, I.88, H.94, I.98
14 PLIP interactions:11 interactions with chain G, 3 interactions with chain F- Hydrogen bonds: G:W.27, G:S.62, G:W.63, G:W.63, G:V.86, G:I.88, F:L.119
- Water bridges: G:V.86, G:V.86, G:I.88, G:H.94, F:L.121, F:W.146
- pi-Stacking: G:W.27
INI.16: 14 residues within 4Å:- Chain G: I.118, L.119, W.146
- Chain H: W.27, N.28, G.61, S.62, W.63, E.64, V.86, L.87, I.88, H.94, I.98
10 PLIP interactions:9 interactions with chain H, 1 interactions with chain G- Hydrogen bonds: H:W.27, H:S.62, H:W.63, H:V.86, H:I.88, G:L.119
- Water bridges: H:V.86, H:I.88, H:H.94
- pi-Stacking: H:W.27
INI.18: 13 residues within 4Å:- Chain H: I.118, L.119
- Chain I: W.27, N.28, G.61, S.62, W.63, E.64, V.86, L.87, I.88, H.94, I.98
11 PLIP interactions:9 interactions with chain I, 2 interactions with chain H- Hydrogen bonds: I:W.27, I:S.62, I:W.63, I:W.63, I:V.86, I:I.88, H:L.119
- Water bridges: I:V.86, I:H.94, H:W.146
- pi-Stacking: I:W.27
INI.20: 14 residues within 4Å:- Chain I: I.118, L.119, W.146
- Chain J: W.27, N.28, G.61, S.62, W.63, E.64, V.86, L.87, I.88, H.94, I.98
9 PLIP interactions:8 interactions with chain J, 1 interactions with chain I- Hydrogen bonds: J:W.27, J:S.62, J:W.63, J:V.86, J:I.88, I:L.119
- Water bridges: J:W.27, J:V.86
- pi-Stacking: J:W.27
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gerhardt, S. et al., The structural basis of riboflavin binding to Schizosaccharomyces pombe 6,7-dimethyl-8-ribityllumazine synthase. J.Mol.Biol. (2002)
- Release Date
- 2002-07-24
- Peptides
- 6,7-Dimethyl-8-ribityllumazine Synthase: ABCDEFGHIJ
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
AG
BH
CI
DJ
E
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-10-mer
- Ligands
- 10 x PO4: PHOSPHATE ION(Non-functional Binders)
- 10 x INI: 5-NITRO-6-RIBITYL-AMINO-2,4(1H,3H)-PYRIMIDINEDIONE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gerhardt, S. et al., The structural basis of riboflavin binding to Schizosaccharomyces pombe 6,7-dimethyl-8-ribityllumazine synthase. J.Mol.Biol. (2002)
- Release Date
- 2002-07-24
- Peptides
- 6,7-Dimethyl-8-ribityllumazine Synthase: ABCDEFGHIJ
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
AG
BH
CI
DJ
E