SMTL ID : 1kz6.1 (1 other biounit)

Mutant enzyme W63Y/L119F Lumazine Synthase from S.pombe

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-pentamer

Ligands

5 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 5 residues within 4Å: Chain A: G.90, S.91, T.92, H.94 Chain E: R.133 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain E Hydrogen bonds: A:S.91, A:T.92, A:T.92 Water bridges: A:T.92, A:F.95 Salt bridges: E:R.133 PO4.2: 5 residues within 4Å: Chain A: R.133 Chain B: G.90, S.91, T.92, H.94 8 PLIP interactions: 5 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:S.91, B:T.92, B:T.92 Water bridges: B:F.95, B:F.95, A:R.133, A:R.133 Salt bridges: A:R.133 PO4.3: 5 residues within 4Å: Chain B: R.133 Chain C: G.90, S.91, T.92, H.94 9 PLIP interactions: 1 interactions with chain B, 8 interactions with chain C Salt bridges: B:R.133 Hydrogen bonds: C:S.91, C:T.92, C:T.92, C:T.92 Water bridges: C:G.90, C:G.90, C:T.92, C:F.95 PO4.4: 5 residues within 4Å: Chain C: R.133 Chain D: G.90, S.91, T.92, H.94 5 PLIP interactions: 4 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:S.91, D:T.92 Water bridges: D:T.92, D:F.95 Salt bridges: C:R.133 PO4.5: 5 residues within 4Å: Chain D: R.133 Chain E: G.90, S.91, T.92, H.94 8 PLIP interactions: 6 interactions with chain E, 2 interactions with chain D Hydrogen bonds: E:S.91, E:T.92, E:T.92 Water bridges: E:G.90, E:T.92, E:F.95, D:R.133 Salt bridges: D:R.133

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gerhardt, S. et al., The structural basis of riboflavin binding to Schizosaccharomyces pombe 6,7-dimethyl-8-ribityllumazine synthase. J.Mol.Biol. (2002)

Release Date

2002-07-24

Peptides

6,7-Dimethyl-8-ribityllumazine Synthase: ABCDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

6,7-Dimethyl-8-ribityllumazine Synthase

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