SMTL ID : 1l3i.3 (2 other biounits)

MT0146, THE PRECORRIN-6Y METHYLTRANSFERASE (CBIT) HOMOLOG FROM M. THERMOAUTOTROPHICUM, ADOHCY BINARY COMPLEX

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-12-mer

Ligands

12 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 23 residues within 4Å: Chain A: P.14, G.15, P.16, T.17, G.41, C.42, G.43, T.44, G.45, G.46, V.47, D.62, R.63, N.64, A.67, G.89, D.90, A.91, G.107, G.108, S.109, G.110, E.112 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:P.14, A:T.17, A:T.17, A:T.17, A:G.43, A:T.44, A:G.45, A:G.46, A:V.47, A:R.63, A:R.63, A:N.64, A:A.91, A:S.109, A:E.112 Water bridges: A:N.64 SAH.2: 23 residues within 4Å: Chain B: P.14, G.15, P.16, T.17, G.41, C.42, G.43, T.44, G.45, G.46, V.47, D.62, R.63, N.64, A.67, G.89, D.90, A.91, G.107, G.108, S.109, G.110, E.112 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:P.14, B:T.17, B:T.17, B:G.43, B:T.44, B:G.45, B:G.46, B:V.47, B:R.63, B:R.63, B:N.64, B:D.90, B:A.91, B:S.109 Water bridges: B:T.17 SAH.3: 23 residues within 4Å: Chain C: P.14, G.15, P.16, T.17, G.41, C.42, G.43, T.44, G.45, G.46, V.47, D.62, R.63, A.67, G.89, D.90, A.91, G.107, G.108, S.109, G.110, E.112, I.116 16 PLIP interactions: 16 interactions with chain C Hydrogen bonds: C:T.17, C:T.17, C:C.42, C:G.43, C:T.44, C:G.45, C:G.46, C:V.47, C:R.63, C:R.63, C:D.90, C:A.91, C:S.109 Water bridges: C:T.17, C:T.17, C:D.62 SAH.4: 23 residues within 4Å: Chain D: P.14, G.15, P.16, T.17, G.41, C.42, G.43, T.44, G.45, G.46, V.47, D.62, R.63, A.67, G.89, D.90, A.91, G.107, G.108, S.109, G.110, E.112, I.116 16 PLIP interactions: 16 interactions with chain D Hydrogen bonds: D:P.14, D:T.17, D:T.17, D:T.17, D:G.43, D:T.44, D:G.45, D:G.46, D:V.47, D:R.63, D:R.63, D:A.91, D:S.109, D:E.112 Water bridges: D:S.12, D:N.64 SAH.5: 23 residues within 4Å: Chain E: V.13, P.14, P.16, T.17, G.41, C.42, G.43, T.44, G.45, G.46, V.47, D.62, R.63, N.64, A.67, G.89, D.90, A.91, G.107, G.108, S.109, G.110, E.112 14 PLIP interactions: 14 interactions with chain E Hydrogen bonds: E:T.17, E:T.17, E:T.17, E:C.42, E:G.43, E:T.44, E:G.45, E:G.46, E:V.47, E:R.63, E:R.63, E:N.64, E:A.91, E:S.109 SAH.6: 22 residues within 4Å: Chain F: P.14, P.16, T.17, G.41, C.42, G.43, T.44, G.45, G.46, V.47, D.62, R.63, N.64, A.67, G.89, D.90, A.91, G.107, G.108, S.109, G.110, E.112 16 PLIP interactions: 16 interactions with chain F Hydrogen bonds: F:T.17, F:T.17, F:C.42, F:G.43, F:T.44, F:G.45, F:G.46, F:V.47, F:R.63, F:R.63, F:N.64, F:D.90, F:A.91, F:S.109, F:E.112 Water bridges: F:N.64 SAH.7: 23 residues within 4Å: Chain G: P.14, G.15, P.16, T.17, G.41, C.42, G.43, T.44, G.45, G.46, V.47, D.62, R.63, N.64, A.67, G.89, D.90, A.91, G.107, G.108, S.109, G.110, E.112 17 PLIP interactions: 17 interactions with chain G Hydrogen bonds: G:P.14, G:T.17, G:T.17, G:G.43, G:T.44, G:G.45, G:G.46, G:V.47, G:R.63, G:R.63, G:N.64, G:D.90, G:A.91, G:S.109 Water bridges: G:T.17, G:T.17, G:N.64 SAH.8: 23 residues within 4Å: Chain H: P.14, G.15, P.16, T.17, G.41, C.42, G.43, T.44, G.45, G.46, V.47, D.62, R.63, N.64, A.67, G.89, D.90, A.91, G.107, G.108, S.109, G.110, E.112 15 PLIP interactions: 15 interactions with chain H Hydrogen bonds: H:P.14, H:T.17, H:T.17, H:T.17, H:G.43, H:T.44, H:G.45, H:G.46, H:V.47, H:R.63, H:R.63, H:N.64, H:A.91, H:S.109, H:E.112 SAH.9: 23 residues within 4Å: Chain I: P.14, G.15, P.16, T.17, G.41, C.42, G.43, T.44, G.45, G.46, V.47, D.62, R.63, A.67, G.89, D.90, A.91, G.107, G.108, S.109, G.110, E.112, I.116 15 PLIP interactions: 15 interactions with chain I Hydrogen bonds: I:T.17, I:T.17, I:T.17, I:C.42, I:G.43, I:T.44, I:G.45, I:G.46, I:V.47, I:R.63, I:R.63, I:A.91, I:S.109, I:E.112 Water bridges: I:D.62 SAH.10: 23 residues within 4Å: Chain J: P.14, G.15, P.16, T.17, G.41, C.42, G.43, T.44, G.45, G.46, V.47, D.62, R.63, A.67, G.89, D.90, A.91, G.107, G.108, S.109, G.110, E.112, I.116 18 PLIP interactions: 18 interactions with chain J Hydrogen bonds: J:P.14, J:T.17, J:T.17, J:G.43, J:T.44, J:T.44, J:G.45, J:G.46, J:V.47, J:R.63, J:R.63, J:D.90, J:A.91, J:S.109 Water bridges: J:S.12, J:T.17, J:T.17, J:N.64 SAH.11: 23 residues within 4Å: Chain K: V.13, P.14, P.16, T.17, G.41, C.42, G.43, T.44, G.45, G.46, V.47, D.62, R.63, N.64, A.67, G.89, D.90, A.91, G.107, G.108, S.109, G.110, E.112 16 PLIP interactions: 16 interactions with chain K Hydrogen bonds: K:T.17, K:T.17, K:T.17, K:C.42, K:G.43, K:T.44, K:G.45, K:G.46, K:V.47, K:R.63, K:R.63, K:N.64, K:D.90, K:A.91, K:S.109, K:E.112 SAH.12: 22 residues within 4Å: Chain L: P.14, P.16, T.17, G.41, C.42, G.43, T.44, G.45, G.46, V.47, D.62, R.63, N.64, A.67, G.89, D.90, A.91, G.107, G.108, S.109, G.110, E.112 15 PLIP interactions: 15 interactions with chain L Hydrogen bonds: L:T.17, L:T.17, L:T.17, L:C.42, L:G.43, L:T.44, L:G.45, L:G.46, L:V.47, L:R.63, L:R.63, L:N.64, L:A.91, L:S.109 Water bridges: L:N.64

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Keller, J.P. et al., The Crystal Structure of Mt0146/CbiT Suggests that the Putative Precorrin-8W Decarboxylase is a Methyltransferase. Structure (2002)

Release Date

2002-11-27

Peptides

Precorrin-6y methyltransferase/putative decarboxylase: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
A

H
B

I
C

J
D

K
E

L
F

Precorrin-6y methyltransferase/putative decarboxylase

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