SMTL ID : 1l5m.1

Crystal Structure of CobT complexed with N7-(5'-phosphoribosyl)-2-aminopurine and nicotinate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x 7RA: 7-ALPHA-D-RIBOFURANOSYL-2-AMINOPURINE-5'-PHOSPHATE(Non-covalent)

7RA.1: 16 residues within 4Å: Chain A: A.78, V.84, Q.88, E.174, L.175, G.176, M.177, A.178, N.179, T.180, G.202, A.203, L.315, E.317 Chain B: P.32 Ligands: NIO.2 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:Q.88, A:E.174, A:G.176, A:G.176, A:A.178, A:T.180, A:A.203, A:E.317 Water bridges: A:V.79, A:V.79, A:T.180, A:T.180, A:I.201, A:K.213 Salt bridges: A:K.213 7RA.3: 16 residues within 4Å: Chain A: P.32 Chain B: A.78, V.84, Q.88, E.174, L.175, G.176, M.177, A.178, N.179, T.180, G.202, A.203, L.315, E.317 Ligands: NIO.4 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:Q.88, B:E.174, B:G.176, B:G.176, B:A.178, B:T.180, B:A.203, B:E.317 Water bridges: B:V.79, B:V.79, B:T.180, B:T.180, B:I.201, B:K.213 Salt bridges: B:K.213

2 x NIO: NICOTINIC ACID(Non-covalent)

NIO.2: 12 residues within 4Å: Chain A: T.180, G.202, A.203, G.264, F.265, L.266, S.291, E.293, R.314, L.315, G.316 Ligands: 7RA.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.266, A:R.314 Hydrogen bonds: A:G.264, A:F.265, A:S.291 Water bridges: A:L.266, A:G.316, A:G.316 NIO.4: 12 residues within 4Å: Chain B: T.180, G.202, A.203, G.264, F.265, L.266, S.291, E.293, R.314, L.315, G.316 Ligands: 7RA.3 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:L.266, B:R.314 Hydrogen bonds: B:G.264, B:F.265, B:S.291 Water bridges: B:L.266, B:G.316, B:G.316

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cheong, C.G. et al., Structural studies of the L-threonine-O-3-phosphate decarboxylase(CobD) enzyme from Salmonella enterica: the apo, substrate, and product-aldimine complexes. Biochemistry (2002)

Release Date

2002-09-07

Peptides

Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase

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