- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.25 Å
- Oligo State
- hetero-oligomer
- Ligands
- 1 x FE2: FE (II) ION(Non-covalent)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- 4 x BCL: BACTERIOCHLOROPHYLL A(Non-covalent)
- 2 x BPH: BACTERIOPHEOPHYTIN A(Non-covalent)
BPH.7: 21 residues within 4Å:- Chain A: F.181, A.184, L.185, L.189, L.219
- Chain B: S.59, L.60, G.63, L.64, A.125, V.126, W.129, T.146, A.149, F.150, A.153, A.273, V.274, T.277
- Ligands: BCL.3, BCL.5
11 PLIP interactions:9 interactions with chain B, 2 interactions with chain A- Hydrophobic interactions: B:L.60, B:L.64, B:A.125, B:W.129, B:A.149, B:F.150, B:F.150, B:T.277, A:A.184, A:L.189
- pi-Stacking: B:F.150
BPH.8: 30 residues within 4Å:- Chain A: T.38, A.42, I.49, C.92, A.93, A.96, F.97, W.100, E.104, I.117, A.120, F.121, A.124, Y.128, F.146, Y.148, G.149, I.150, H.153, L.238, V.241
- Chain B: Y.210, A.213, L.214, M.218, W.252, M.256
- Ligands: BCL.4, BCL.6, U10.9
18 PLIP interactions:16 interactions with chain A, 2 interactions with chain B- Hydrophobic interactions: A:T.38, A:A.42, A:I.49, A:A.96, A:A.120, A:F.121, A:F.121, A:A.124, A:F.146, A:Y.148, A:Y.148, A:Y.148, A:L.238, A:V.241, A:V.241, B:A.213, B:L.214
- pi-Stacking: A:F.121
- 1 x U10: UBIQUINONE-10(Non-covalent)
U10.9: 19 residues within 4Å:- Chain A: W.100
- Chain B: L.214, M.218, H.219, T.222, A.248, A.249, W.252, M.256, F.258, N.259, A.260, T.261, M.262, I.265, W.268, M.272
- Ligands: BCL.6, BPH.8
12 PLIP interactions:12 interactions with chain B- Hydrophobic interactions: B:L.214, B:M.218, B:W.252, B:M.256, B:F.258, B:F.258, B:A.260, B:I.265, B:W.268, B:W.268
- Hydrogen bonds: B:T.222, B:A.260
- 1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)
HEM.10: 25 residues within 4Å:- Chain B: L.191
- Chain D: Q.14, C.15, C.18, H.19, T.36, P.38, R.46, A.48, G.49, F.54, G.56, Y.57, G.58, M.61, W.71, F.76, Y.79, V.80, K.99, M.100, T.101, F.102, L.104, I.113
20 PLIP interactions:19 interactions with chain D, 1 interactions with chain B,- Hydrophobic interactions: D:T.36, D:F.54, D:W.71, D:F.76, D:F.76, D:Y.79, D:V.80, D:F.102, D:F.102, D:L.104, D:I.113, B:L.191
- Hydrogen bonds: D:G.49, D:G.58, D:K.99
- Salt bridges: D:R.46
- pi-Stacking: D:H.19, D:H.19
- pi-Cation interactions: D:H.19
- Metal complexes: D:H.19
- 2 x LDA: LAURYL DIMETHYLAMINE-N-OXIDE(Non-covalent)
LDA.11: 9 residues within 4Å:- Chain A: W.151
- Chain B: P.200, L.204, A.207, F.208, W.268
- Chain C: W.21, I.28
- Ligands: BCL.6
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain C- Hydrophobic interactions: B:L.204, B:A.207, B:W.268, C:W.21
LDA.12: 9 residues within 4Å:- Chain B: F.67, F.74, M.122, V.175, P.176, Y.177, G.178, H.182
- Ligands: BCL.3
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:F.67, B:F.74, B:V.175, B:H.182
- pi-Cation interactions: B:Y.177
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
-
Axelrod, H.L. et al., X-ray structure determination of the cytochrome c2: reaction center electron transfer complex from Rhodobacter sphaeroides. J.Mol.Biol. (2002)
- Release Date
- 2002-06-12
- Peptides
- REACTION CENTER PROTEIN L CHAIN: A
REACTION CENTER PROTEIN M CHAIN: B
REACTION CENTER PROTEIN H CHAIN: C
cytochrome c-2: D - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
RB
SC
TD
D - Membrane
-
We predict this structure to be a membrane protein.
SMTL ID : 1l9j.2 (1 other biounit)
X-Ray Structure of the Cytochrome-c(2)-Photosynthetic Reaction Center Electron Transfer Complex from Rhodobacter sphaeroides in Type I Co-Crystals
REACTION CENTER PROTEIN L CHAIN
REACTION CENTER PROTEIN M CHAIN
REACTION CENTER PROTEIN H CHAIN
cytochrome c-2
Related Entries With Identical Sequence
1aig.1 | 1aig.2 | 1aij.1 | 1aij.2 | 1cxa.1 | 1cxc.1 | 1ds8.1 | 1ds8.2 | 1dv3.1 | 1dv3.2 | 1dv6.1 | 1dv6.2 | 1e14.1 | 1e6d.1 | 1f6n.1 | 1fnp.1 | 1fnq.1 | 1jgw.1 | 1jgx.1 | 1jgy.1 | 1jgz.1 | 1jh0.1 | 1k6l.1 | 1k6n.1 | 1kby.1 | 1l9b.1 | 1l9j.1 | 1m3x.1 | 1mps.1 | 1ogv.1 more...less...1pcr.1 |
1qov.1 |
1rg5.1 |
1rgn.1 |
1rqk.1 |
1ry5.1 |
1rzh.1 |
1rzz.1 |
1rzz.2 |
1s00.1 |
1s00.2 |
1umx.1 |
1yf6.1 |
1yst.1 |
1z9j.1 |
1z9k.1 |
1z9k.2 |
2bnp.1 |
2bns.1 |
2boz.1 |
2cxb.1 |
2cxb.2 |
2gmr.1 |
2gnu.1 |
2hg3.1 |
2hg9.1 |
2hh1.1 |
2hhk.1 |
2hit.1 |
2hj6.1 |
2j8c.1 |
2j8d.1 |
2jiy.1 |
2jj0.1 |
2rcr.1 |
2uws.1 |
2uwt.1 |
2uwu.1 |
2uwv.1 |
2uww.1 |
2ux3.1 |
2ux4.1 |
2ux5.1 |
2uxj.1 |
2uxk.1 |
2uxl.1 |
2uxm.1 |
2wx5.1 |
3dsy.1 |
3dta.1 |
3dtr.1 |
3dts.1 |
3du2.1 |
3du3.1 |
3duq.1 |
3i4d.1 |
3zum.1 |
3zuw.1 |
4h99.1 |
4h9l.1 |
4hbh.1 |
4hbj.1 |
4in6.1 |
4lwy.1 |
4n7k.1 |
4n7l.1 |
4rcr.1 |
4tqq.1 |
4v9g.30 |
4v9g.62 |
5lri.1 |
5lse.1