SMTL ID : 1l9k.1 (1 other biounit)

dengue methyltransferase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: R.47, K.51, S.65, R.66, R.93 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.66 Salt bridges: A:R.47, A:K.51, A:R.66, A:R.93 SO4.2: 2 residues within 4Å: Chain A: K.114, H.119 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.114, A:H.119 SO4.3: 4 residues within 4Å: Chain A: G.118, H.119, E.120 Ligands: SAH.6 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.120 Salt bridges: A:H.119 SO4.4: 4 residues within 4Å: Chain A: K.38, R.66, R.221, T.224 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.221 Water bridges: A:R.66, A:R.66, A:S.223 Salt bridges: A:K.38, A:R.66, A:R.221 SO4.5: 4 residues within 4Å: Chain A: K.38, K.39, R.66, R.221 4 PLIP interactions: 4 interactions with chain A Salt bridges: A:K.38, A:K.39, A:R.66, A:R.221

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.6: 18 residues within 4Å: Chain A: S.65, G.67, G.90, C.91, G.94, G.95, W.96, T.113, K.114, H.119, E.120, V.139, D.140, V.141, F.142, D.155, I.156 Ligands: SO4.3 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:S.65, A:C.91, A:G.94, A:G.95, A:W.96, A:K.114, A:E.120, A:D.140, A:V.141, A:D.155 Water bridges: A:G.115

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Egloff, M.P. et al., An RNA cap (nucleoside-2'-O-) methyltransferase in the flavivirus RNA polymerase NS5: crystal structure and functional characterization. Embo J. (2002)

Release Date

2003-03-25

Peptides

RNA-DIRECTED RNA POLYMERASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNA-DIRECTED RNA POLYMERASE

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