SMTL ID : 1lcs.4 (3 other biounits)

RECEPTOR-BINDING DOMAIN FROM SUBGROUP B FELINE LEUKEMIA VIRUS

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: N.9, T.207 Chain B: D.177 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 3 residues within 4Å: Chain B: N.9, T.11, M.204 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 7 residues within 4Å: Chain B: N.24, A.25, T.26, Y.40, F.41, D.42, R.159 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- MAN- BMA- NDG: 2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-2)-beta-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-MAN-BMA-NDG.2: 10 residues within 4Å: Chain A: N.24, A.25, T.26, Y.40, F.41, D.42, K.123, R.159, I.164, Q.166 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.123

1 x TOE: 2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL(Non-covalent)

TOE.5: 3 residues within 4Å: Chain B: A.85, R.87, W.117 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Barnett, A.L. et al., Structure and Mechanism of a Coreceptor for Infection by a pathogenic feline retrovirus. J.Virol. (2003)

Release Date

2003-04-08

Peptides

FELINE LEUKEMIA VIRUS RECEPTOR-BINDING DOMAIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

FELINE LEUKEMIA VIRUS RECEPTOR-BINDING DOMAIN

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