SMTL ID : 1ldm.3 (3 other biounits)

Refined crystal structure of dogfish M4 apo-lactate dehydrogenase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 26 residues within 4Å: Chain A: V.28, G.29, A.30, V.31, D.52, V.53, M.54, T.95, A.96, G.97, A.98, R.99, L.109, N.113, I.116, I.120, V.136, S.137, N.138, V.140, S.161, L.165, H.193, T.245, I.249 Ligands: OXM.2 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:V.31, A:I.249 Hydrogen bonds: A:V.28, A:A.30, A:V.31, A:V.53, A:G.97, A:A.98, A:N.113, A:V.136, A:N.138, A:N.138, A:S.161 Water bridges: A:R.99, A:T.245 Salt bridges: A:R.99, A:R.99

2 x OXM: OXAMIC ACID(Non-covalent)

OXM.2: 9 residues within 4Å: Chain A: Q.100, R.106, N.138, L.165, R.169, H.193, A.235, T.245 Ligands: NAD.1 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.106, A:N.138, A:N.138 Salt bridges: A:R.106, A:R.169, A:H.193 OXM.3: 4 residues within 4Å: Chain A: R.171, H.186, W.188, V.267 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.171, A:H.186

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abad-Zapatero, C. et al., Refined crystal structure of dogfish M4 apo-lactate dehydrogenase. J.Mol.Biol. (1987)

Release Date

1989-07-12

Peptides

M4 LACTATE DEHYDROGENASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

M4 LACTATE DEHYDROGENASE

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