SMTL ID : 1lee.3 (2 other biounits)

CRYSTAL STRUCTURE OF PLASMEPSIN FROM P. FALCIPARUM IN COMPLEX WITH INHIBITOR RS367

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-tetramer

Ligands

4 x R36: 4-AMINO-N-{4-[2-(2,6-DIMETHYL-PHENOXY)-ACETYLAMINO]-3-HYDROXY-1-ISOBUTYL-5-PHENYL-PENTYL}-BENZAMIDE(Non-covalent)

R36.1: 24 residues within 4Å: Chain A: D.36, G.38, S.39, M.77, N.78, Y.79, V.80, S.81, F.113, I.125, L.133, Y.194, D.216, G.218, T.219, S.220, T.223, I.292, F.296, I.302 Chain B: P.297 Chain C: P.242, F.243, L.244 21 PLIP interactions: 17 interactions with chain A, 3 interactions with chain C, 1 interactions with chain B Hydrophobic interactions: A:Y.79, A:V.80, A:F.113, A:I.125, A:L.133, A:Y.194, A:T.219, A:T.223, A:I.292, A:F.296, C:P.242, C:F.243, C:L.244, B:P.297 Hydrogen bonds: A:G.38, A:N.78, A:V.80, A:S.81, A:D.216, A:G.218 pi-Stacking: A:Y.79 R36.2: 24 residues within 4Å: Chain A: P.297 Chain B: D.36, G.38, S.39, M.77, N.78, Y.79, V.80, S.81, F.113, I.125, L.133, Y.194, D.216, G.218, T.219, S.220, T.223, I.292, F.296, I.302 Chain D: P.242, F.243, L.244 21 PLIP interactions: 17 interactions with chain B, 3 interactions with chain D, 1 interactions with chain A Hydrophobic interactions: B:Y.79, B:V.80, B:F.113, B:I.125, B:L.133, B:Y.194, B:T.219, B:T.223, B:I.292, B:F.296, D:P.242, D:F.243, D:L.244, A:P.297 Hydrogen bonds: B:G.38, B:N.78, B:V.80, B:S.81, B:D.216, B:G.218 pi-Stacking: B:Y.79 R36.3: 24 residues within 4Å: Chain A: P.242, F.243, L.244 Chain C: D.36, G.38, S.39, M.77, N.78, Y.79, V.80, S.81, F.113, I.125, L.133, Y.194, D.216, G.218, T.219, S.220, T.223, I.292, F.296, I.302 Chain D: P.297 21 PLIP interactions: 3 interactions with chain A, 17 interactions with chain C, 1 interactions with chain D Hydrophobic interactions: A:P.242, A:F.243, A:L.244, C:Y.79, C:V.80, C:F.113, C:I.125, C:L.133, C:Y.194, C:T.219, C:T.223, C:I.292, C:F.296, D:P.297 Hydrogen bonds: C:G.38, C:N.78, C:V.80, C:S.81, C:D.216, C:G.218 pi-Stacking: C:Y.79 R36.4: 24 residues within 4Å: Chain B: P.242, F.243, L.244 Chain C: P.297 Chain D: D.36, G.38, S.39, M.77, N.78, Y.79, V.80, S.81, F.113, I.125, L.133, Y.194, D.216, G.218, T.219, S.220, T.223, I.292, F.296, I.302 21 PLIP interactions: 17 interactions with chain D, 3 interactions with chain B, 1 interactions with chain C Hydrophobic interactions: D:Y.79, D:V.80, D:F.113, D:I.125, D:L.133, D:Y.194, D:T.219, D:T.223, D:I.292, D:F.296, B:P.242, B:F.243, B:L.244, C:P.297 Hydrogen bonds: D:G.38, D:N.78, D:V.80, D:S.81, D:D.216, D:G.218 pi-Stacking: D:Y.79

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Asojo, O.A. et al., Structures of Ser205 mutant plasmepsin II from Plasmodium falciparum at 1.8 A in complex with the inhibitors rs367 and rs370. Acta Crystallogr.,Sect.D (2002)

Release Date

2002-10-09

Peptides

Plasmepsin 2: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Plasmepsin 2

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