SMTL ID : 1lga.2 (1 other biounit)

CRYSTALLOGRAPHIC REFINEMENT OF LIGNIN PEROXIDASE AT 2 ANGSTROMS

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.03 Å

Oligo State

monomer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: N.257, K.260 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.257

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain A: S.177, D.194, T.196, I.199, D.201 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.194, A:D.194, A:T.196, A:I.199, A:D.201 CA.3: 4 residues within 4Å: Chain A: D.48, G.66, D.68, S.70 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.48, A:D.48, A:S.70, H2O.3, H2O.4

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.4: 24 residues within 4Å: Chain A: H.39, E.40, I.42, R.43, F.46, I.85, P.145, E.146, P.147, I.154, M.172, L.173, A.175, H.176, V.178, A.179, A.180, V.181, N.182, D.183, V.184, F.193, I.235, T.237 27 PLIP interactions: 26 interactions with chain A, 1 Ligand-Water interactions, Hydrophobic interactions: A:I.42, A:R.43, A:F.46, A:F.46, A:F.46, A:P.145, A:P.147, A:I.154, A:M.172, A:L.173, A:A.175, A:A.179, A:V.181, A:F.193, A:I.235 Hydrogen bonds: A:I.85, A:A.180, A:N.182, A:N.182, A:D.183, A:V.184 Salt bridges: A:R.43 pi-Stacking: A:F.46, A:F.193 pi-Cation interactions: A:H.176 Metal complexes: A:H.176, H2O.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Poulos, T.L. et al., Crystallographic refinement of lignin peroxidase at 2 A. J.Biol.Chem. (1993)

Release Date

1993-10-31

Peptides

LIGNIN PEROXIDASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

LIGNIN PEROXIDASE

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