SMTL ID : 1llu.1 (1 other biounit)

THE TERNARY COMPLEX OF PSEUDOMONAS AERUGINOSA ALCOHOL DEHYDROGENASE WITH ITS COENZYME AND WEAK SUBSTRATE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-tetramer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: C.44, T.46, H.67, C.154 Ligands: NAD.3, EDO.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.44, A:H.67, A:C.154 ZN.2: 5 residues within 4Å: Chain A: C.98, G.99, C.101, C.104, C.112 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.98, A:C.101, A:C.104, A:C.112 ZN.6: 6 residues within 4Å: Chain B: C.44, T.46, H.67, C.154 Ligands: NAD.8, EDO.9 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.44, B:H.67, B:C.154 ZN.7: 5 residues within 4Å: Chain B: C.98, G.99, C.101, C.104, C.112 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.98, B:C.101, B:C.104, B:C.112 ZN.10: 6 residues within 4Å: Chain C: C.44, T.46, H.67, C.154 Ligands: NAD.12, EDO.13 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:C.44, C:H.67, C:C.154 ZN.11: 5 residues within 4Å: Chain C: C.98, G.99, C.101, C.104, C.112 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.98, C:C.101, C:C.104, C:C.112 ZN.15: 6 residues within 4Å: Chain D: C.44, T.46, H.67, C.154 Ligands: NAD.17, EDO.18 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:C.44, D:H.67, D:C.154 ZN.16: 5 residues within 4Å: Chain D: C.98, G.99, C.101, C.104, C.112 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.98, D:C.101, D:C.104, D:C.112

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.3: 33 residues within 4Å: Chain A: C.44, H.45, T.46, H.49, W.55, C.154, T.158, S.177, G.178, I.179, G.180, G.181, L.182, I.200, D.201, I.202, K.206, T.243, A.244, V.245, S.246, A.249, V.266, G.267, L.268, P.269, S.290, I.291, V.292, R.337 Chain B: V.281 Ligands: ZN.1, EDO.4 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:T.158, A:L.182 Hydrogen bonds: A:H.45, A:T.46, A:H.49, A:I.179, A:I.179, A:G.181, A:L.182, A:V.245, A:S.246, A:S.246, A:V.266, A:L.268, A:V.292 Water bridges: A:G.180, A:G.183, A:R.222, A:S.248, A:R.337 Salt bridges: A:H.45, A:R.337 NAD.8: 32 residues within 4Å: Chain A: V.281 Chain B: C.44, H.45, T.46, H.49, C.154, T.158, S.177, G.178, I.179, G.180, G.181, L.182, I.200, D.201, I.202, K.206, T.243, A.244, V.245, S.246, S.248, A.249, V.266, G.267, L.268, S.290, I.291, V.292, R.337 Ligands: ZN.6, EDO.9 20 PLIP interactions: 20 interactions with chain B Hydrophobic interactions: B:T.158, B:L.182 Hydrogen bonds: B:H.45, B:T.46, B:H.49, B:T.158, B:I.179, B:I.179, B:G.181, B:L.182, B:S.246, B:S.246, B:V.266, B:L.268, B:V.292 Water bridges: B:K.206, B:R.222, B:R.222 Salt bridges: B:H.45, B:R.337 NAD.12: 33 residues within 4Å: Chain C: C.44, H.45, T.46, H.49, W.55, C.154, T.158, S.177, G.178, I.179, G.180, G.181, L.182, I.200, D.201, I.202, K.206, T.243, A.244, V.245, S.246, A.249, V.266, G.267, L.268, P.269, S.290, I.291, V.292, R.337 Chain D: V.281 Ligands: ZN.10, EDO.13 21 PLIP interactions: 21 interactions with chain C Hydrophobic interactions: C:T.158, C:L.182 Hydrogen bonds: C:H.45, C:H.49, C:I.179, C:I.179, C:G.181, C:L.182, C:V.245, C:S.246, C:S.246, C:V.266, C:L.268, C:V.292 Water bridges: C:G.180, C:G.183, C:R.222, C:S.248, C:R.337 Salt bridges: C:H.45, C:R.337 NAD.17: 32 residues within 4Å: Chain C: V.281 Chain D: C.44, H.45, T.46, H.49, C.154, T.158, S.177, G.178, I.179, G.180, G.181, L.182, I.200, D.201, I.202, K.206, T.243, A.244, V.245, S.246, S.248, A.249, V.266, G.267, L.268, S.290, I.291, V.292, R.337 Ligands: ZN.15, EDO.18 18 PLIP interactions: 18 interactions with chain D Hydrophobic interactions: D:T.158, D:L.182 Hydrogen bonds: D:H.45, D:H.49, D:I.179, D:I.179, D:G.181, D:L.182, D:S.246, D:S.246, D:V.266, D:L.268, D:V.292 Water bridges: D:K.206, D:R.222, D:R.222 Salt bridges: D:H.45, D:R.337

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 10 residues within 4Å: Chain A: C.44, T.46, W.55, H.67, W.93, C.154, L.268, V.292 Ligands: ZN.1, NAD.3 No protein-ligand interaction detected (PLIP) EDO.5: 6 residues within 4Å: Chain A: H.45, L.48, H.49, E.52, D.54, V.245 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.54 EDO.9: 10 residues within 4Å: Chain B: C.44, T.46, W.55, H.67, W.93, C.154, L.268, V.292 Ligands: ZN.6, NAD.8 No protein-ligand interaction detected (PLIP) EDO.13: 10 residues within 4Å: Chain C: C.44, T.46, W.55, H.67, W.93, C.154, L.268, V.292 Ligands: ZN.10, NAD.12 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:T.46 EDO.14: 6 residues within 4Å: Chain C: H.45, L.48, H.49, E.52, D.54, V.245 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:D.54 EDO.18: 10 residues within 4Å: Chain D: C.44, T.46, W.55, H.67, W.93, C.154, L.268, V.292 Ligands: ZN.15, NAD.17 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:T.46, D:H.67

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Levin, I. et al., The ternary complex of Pseudomonas aeruginosa alcohol dehydrogenase with NADH and ethylene glycol. Protein Sci. (2004)

Release Date

2003-11-11

Peptides

Alcohol Dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Alcohol Dehydrogenase

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