- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.05 Å
- Oligo State
- homo-heptamer
- Ligands
- 7 x URI: URIDINE(Non-covalent)
- 10 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 7 residues within 4Å:- Chain A: K.27, E.33, I.55
- Chain B: E.54, I.56, Y.61, R.63
6 PLIP interactions:4 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:K.27, B:R.63
- Water bridges: A:E.33, A:E.33, A:G.58, B:R.63
GOL.4: 6 residues within 4Å:- Chain B: K.27, E.33, I.55
- Chain C: E.54, I.56, R.63
4 PLIP interactions:2 interactions with chain C, 2 interactions with chain B- Hydrogen bonds: C:E.54, C:R.63, B:K.27, B:E.33
GOL.6: 6 residues within 4Å:- Chain C: K.27, E.33
- Chain D: E.54, I.56, Y.61, R.63
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:K.27
GOL.10: 5 residues within 4Å:- Chain D: K.27, E.33
- Chain E: I.56, Y.61, R.63
4 PLIP interactions:2 interactions with chain D, 2 interactions with chain E- Hydrogen bonds: D:K.27, D:K.27, E:R.63, E:R.63
GOL.12: 5 residues within 4Å:- Chain E: K.27, E.33
- Chain F: I.56, Y.61, R.63
6 PLIP interactions:4 interactions with chain E, 2 interactions with chain F- Hydrogen bonds: E:K.27, E:K.27, F:R.63
- Water bridges: E:E.33, E:E.33, F:R.63
GOL.13: 4 residues within 4Å:- Chain E: R.35, I.55, G.58, V.60
3 PLIP interactions:3 interactions with chain E- Hydrogen bonds: E:R.35, E:R.35, E:G.58
GOL.14: 5 residues within 4Å:- Chain E: Q.23, R.35, G.36, I.37, D.51
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:Q.23, E:R.35
GOL.16: 3 residues within 4Å:- Chain F: N.59, V.60, Y.61
2 PLIP interactions:2 interactions with chain F- Hydrogen bonds: F:V.60, F:V.60
GOL.17: 5 residues within 4Å:- Chain F: K.27, E.33
- Chain G: E.54, Y.61, R.63
4 PLIP interactions:3 interactions with chain G, 1 interactions with chain F- Hydrogen bonds: G:E.54, G:R.63, G:R.63, F:K.27
GOL.19: 7 residues within 4Å:- Chain A: E.54, I.56, Y.61, R.63
- Chain G: K.27, E.33, I.55
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain G- Water bridges: A:R.63
- Hydrogen bonds: G:K.27
- 2 x ACY: ACETIC ACID(Non-functional Binders)
ACY.5: 7 residues within 4Å:- Chain A: R.29
- Chain B: R.29
- Chain C: R.29
- Chain D: R.29
- Chain E: R.29
- Chain F: R.29
- Chain G: R.29
7 PLIP interactions:1 interactions with chain E, 1 interactions with chain C, 1 interactions with chain D, 1 interactions with chain F, 1 interactions with chain B, 1 interactions with chain G, 1 interactions with chain A- Salt bridges: E:R.29, C:R.29, D:R.29, F:R.29, B:R.29, G:R.29, A:R.29
ACY.9: 3 residues within 4Å:- Chain D: R.35, I.55, G.58
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mura, C. et al., The oligomerization and ligand-binding properties of Sm-like archaeal proteins (SmAPs). Protein Sci. (2003)
- Release Date
- 2003-03-25
- Peptides
- small nuclear ribonucleoprotein homolog (Sm-like): ABCDEFG
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
G
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.05 Å
- Oligo State
- homo-heptamer
- Ligands
- 7 x URI: URIDINE(Non-covalent)
- 10 x GOL: GLYCEROL(Non-functional Binders)
- 2 x ACY: ACETIC ACID(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mura, C. et al., The oligomerization and ligand-binding properties of Sm-like archaeal proteins (SmAPs). Protein Sci. (2003)
- Release Date
- 2003-03-25
- Peptides
- small nuclear ribonucleoprotein homolog (Sm-like): ABCDEFG
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
G