- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.96 Å
- Oligo State
- homo-hexamer
- Ligands
- 27 x SO4: SULFATE ION(Non-functional Binders)
- 9 x DIO: 1,4-DIETHYLENE DIOXIDE(Non-covalent)
DIO.6: 6 residues within 4Å:- Chain A: M.6, Q.8, S.110, F.111, N.112, E.291
1 PLIP interactions:1 interactions with chain A- Water bridges: A:Q.8
DIO.7: 6 residues within 4Å:- Chain A: A.107, M.129, R.130, S.131, Q.132, G.133
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:G.182
DIO.8: 2 residues within 4Å:- Chain A: G.122, S.123
No protein-ligand interaction detected (PLIP)DIO.14: 7 residues within 4Å:- Chain B: F.139, I.140, A.141, C.144, H.162, L.164, E.165
1 PLIP interactions:1 interactions with chain B- Water bridges: B:E.165
DIO.20: 3 residues within 4Å:- Chain C: R.216, W.217, R.275
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:R.216, C:W.217
- Water bridges: C:R.275, C:R.275, C:R.275, C:R.275
DIO.21: 3 residues within 4Å:- Chain C: S.123
- Chain D: M.6, R.294
No protein-ligand interaction detected (PLIP)DIO.27: 5 residues within 4Å:- Chain D: W.217, G.274, R.275, T.276
- Ligands: SO4.24
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:T.276
DIO.34: 4 residues within 4Å:- Chain E: S.223, M.224, S.225, S.228
1 PLIP interactions:1 interactions with chain E- Hydrogen bonds: E:S.228
DIO.35: 4 residues within 4Å:- Chain E: K.136
- Chain F: S.1, G.2, N.213
2 PLIP interactions:1 interactions with chain F, 1 interactions with chain E- Hydrogen bonds: F:G.2, E:K.136
- 6 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)
MRD.9: 6 residues within 4Å:- Chain A: H.41, T.47, H.163, L.164, Q.187, P.188
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:H.41, A:T.47, A:P.188
- Water bridges: A:E.165
MRD.15: 8 residues within 4Å:- Chain B: H.41, T.47, I.51, Y.53, L.164, D.186, Q.187, P.188
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:H.41, B:L.164, B:L.164, B:D.186
- Hydrogen bonds: B:T.47
MRD.22: 9 residues within 4Å:- Chain C: H.41, T.47, I.51, H.163, L.164, D.186, Q.187, P.188
- Chain F: M.190
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:L.164
- Hydrogen bonds: C:T.47
MRD.28: 8 residues within 4Å:- Chain D: H.41, T.47, I.51, H.163, L.164, D.186, Q.187, P.188
4 PLIP interactions:4 interactions with chain D- Hydrophobic interactions: D:H.41, D:I.51
- Hydrogen bonds: D:H.163, D:D.186
MRD.36: 8 residues within 4Å:- Chain E: H.41, T.47, I.51, Y.53, H.163, L.164, D.186, P.188
3 PLIP interactions:3 interactions with chain E- Hydrophobic interactions: E:H.41, E:I.51, E:P.188
MRD.42: 9 residues within 4Å:- Chain F: H.41, T.47, I.51, Y.53, H.163, L.164, D.186, Q.187, P.188
5 PLIP interactions:5 interactions with chain F- Hydrophobic interactions: F:H.41, F:T.47, F:I.51, F:L.164
- Hydrogen bonds: F:Q.187
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Anand, K. et al., Structure of coronavirus main proteinase reveals combination of a chymotrypsin fold with an extra alpha-helical domain. EMBO J. (2002)
- Release Date
- 2002-07-17
- Peptides
- Replicase, hydrolase domain: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
ED
FE
CF
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.96 Å
- Oligo State
- homo-hexamer
- Ligands
- 27 x SO4: SULFATE ION(Non-functional Binders)
- 9 x DIO: 1,4-DIETHYLENE DIOXIDE(Non-covalent)
- 6 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Anand, K. et al., Structure of coronavirus main proteinase reveals combination of a chymotrypsin fold with an extra alpha-helical domain. EMBO J. (2002)
- Release Date
- 2002-07-17
- Peptides
- Replicase, hydrolase domain: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
ED
FE
CF
D