SMTL ID : 1m3d.1 (1 other biounit)

Structure of Type IV Collagen NC1 Domains

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-4-2-mer

Ligands

18 x BR: BROMIDE ION(Non-covalent)

BR.1: 5 residues within 4Å: Chain A: F.64, N.66 Chain B: Y.189 Chain D: Y.185, A.186 Ligand excluded by PLIP BR.2: 5 residues within 4Å: Chain A: Y.185, A.186 Chain D: F.64, N.66 Chain E: Y.189 Ligand excluded by PLIP BR.3: 7 residues within 4Å: Chain A: R.179 Chain D: A.74, S.75, R.76, N.77, D.78, G.178 Ligand excluded by PLIP BR.4: 7 residues within 4Å: Chain A: A.74, S.75, R.76, N.77, D.78, G.178 Chain D: R.179 Ligand excluded by PLIP BR.6: 6 residues within 4Å: Chain B: A.74, S.75, R.76, N.77, D.78, G.178 Ligand excluded by PLIP BR.7: 5 residues within 4Å: Chain B: F.64, N.66 Chain C: Y.187 Chain F: Y.183, A.184 Ligand excluded by PLIP BR.8: 2 residues within 4Å: Chain B: Y.28, R.55 Ligand excluded by PLIP BR.9: 4 residues within 4Å: Chain B: Y.141, E.167, F.168, R.216 Ligand excluded by PLIP BR.10: 4 residues within 4Å: Chain B: G.213, E.214, L.215, R.216 Ligand excluded by PLIP BR.13: 5 residues within 4Å: Chain C: A.73, S.74, R.75, N.76, D.77 Ligand excluded by PLIP BR.14: 6 residues within 4Å: Chain A: Y.189 Chain C: Y.63, N.65, Y.71 Chain E: Y.185, A.186 Ligand excluded by PLIP BR.15: 5 residues within 4Å: Chain C: Y.183, A.184 Chain E: F.64, N.66 Chain F: Y.187 Ligand excluded by PLIP BR.16: 4 residues within 4Å: Chain C: G.211, L.212, I.213, R.214 Ligand excluded by PLIP BR.17: 4 residues within 4Å: Chain D: G.213, E.214, L.215, R.216 Ligand excluded by PLIP BR.19: 6 residues within 4Å: Chain E: A.74, S.75, R.76, N.77, D.78, G.178 Ligand excluded by PLIP BR.20: 4 residues within 4Å: Chain E: G.213, E.214, L.215, R.216 Ligand excluded by PLIP BR.23: 5 residues within 4Å: Chain F: A.73, S.74, R.75, N.76, D.77 Ligand excluded by PLIP BR.24: 6 residues within 4Å: Chain B: Y.185, A.186 Chain D: Y.189 Chain F: Y.63, N.65, Y.71 Ligand excluded by PLIP

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 6 residues within 4Å: Chain A: A.194, T.195, S.208, H.218 Chain C: L.62, Y.72 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.195, A:S.208 GOL.11: 5 residues within 4Å: Chain A: L.63, F.73 Chain B: A.194, T.195, H.218 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.195, B:S.208, B:S.208 GOL.18: 4 residues within 4Å: Chain D: T.195, H.218 Chain F: L.62, Y.72 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:T.195, D:H.218 GOL.21: 6 residues within 4Å: Chain D: L.63, F.73 Chain E: A.194, T.195, S.208, H.218 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:T.195, E:S.208, E:S.208

2 x LU: LUTETIUM (III) ION(Non-covalent)

LU.12: 3 residues within 4Å: Chain C: D.148, E.149 Chain F: D.148 4 PLIP interactions: 2 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:D.148, C:E.149, H2O.9, H2O.23 LU.22: 3 residues within 4Å: Chain C: D.148 Chain F: D.148, E.149 4 PLIP interactions: 2 interactions with chain F, 2 Ligand-Water interactions Metal complexes: F:D.148, F:E.149, H2O.8, H2O.21

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sundaramoorthy, M. et al., Crystal Structure of NC1 Domains. Structural Basis for Type IV Collagen Assembly in Basement Membranes. J.Biol.Chem. (2002)

Release Date

2003-01-07

Peptides

Type IV Collagen Noncollagenous Domain- Alpha1: ABDE
Type IV Collagen Noncollagenous Domain- Alpha2: CF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

D
D

E
E

C
C

F
F

Type IV Collagen Noncollagenous Domain- Alpha1

Type IV Collagen Noncollagenous Domain- Alpha2

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