SMTL ID : 1m6u.3 (4 other biounits)

Crystal Structure of a Novel DNA-binding domain from Ndt80, a Transcriptional Activator Required for Meiosis in Yeast

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-tetramer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: R.39, G.40, F.41, N.54 Chain B: R.39, R.144 8 PLIP interactions: 3 interactions with chain B, 5 interactions with chain A Water bridges: B:R.39, A:R.39, A:R.39 Salt bridges: B:R.39, B:R.144 Hydrogen bonds: A:G.40, A:N.54, A:N.54 SO4.2: 4 residues within 4Å: Chain A: H.43, I.44, D.45, E.46 7 PLIP interactions: 1 interactions with chain B, 6 interactions with chain A Water bridges: B:Q.141, A:H.43, A:E.46 Hydrogen bonds: A:D.45, A:E.46, A:E.46 Salt bridges: A:H.43 SO4.3: 7 residues within 4Å: Chain A: A.146, V.149, R.150, N.151, I.152, T.153, R.193 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.151, A:N.151, A:T.153, A:T.153, A:K.154 Salt bridges: A:R.193 SO4.4: 6 residues within 4Å: Chain A: R.39, R.144 Chain B: R.39, G.40, F.41, N.54 8 PLIP interactions: 3 interactions with chain A, 5 interactions with chain B Water bridges: A:R.39, B:R.39, B:R.39 Salt bridges: A:R.39, A:R.144 Hydrogen bonds: B:G.40, B:N.54, B:N.54 SO4.5: 4 residues within 4Å: Chain B: H.43, I.44, D.45, E.46 6 PLIP interactions: 1 interactions with chain A, 5 interactions with chain B Water bridges: A:Q.141, B:H.43 Hydrogen bonds: B:D.45, B:E.46, B:E.46 Salt bridges: B:H.43 SO4.6: 7 residues within 4Å: Chain B: A.146, V.149, R.150, N.151, I.152, T.153, R.193 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:N.151, B:N.151, B:T.153, B:K.154 Salt bridges: B:R.193 SO4.7: 6 residues within 4Å: Chain A: S.201, K.207, P.208, F.209, Q.210 Chain C: R.27 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:S.201, A:F.209, A:Q.210 Water bridges: A:S.201 Salt bridges: C:R.27 SO4.8: 6 residues within 4Å: Chain B: S.201, K.207, P.208, F.209, Q.210 Chain D: R.27 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain D Hydrogen bonds: B:S.201, B:F.209, B:Q.210 Water bridges: B:S.201 Salt bridges: D:R.27

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Montano, S.P. et al., Crystal structure of the DNA-binding domain from Ndt80, a transcriptional activator required for meiosis in yeast. Proc.Natl.Acad.Sci.USA (2002)

Release Date

2002-11-06

Peptides

Ndt80 protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
B

D
B

Ndt80 protein

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