SMTL ID : 1mb9.1 (1 other biounit)

BETA-LACTAM SYNTHETASE COMPLEXED WITH ATP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.11 Å

Oligo State

monomer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: K.443 Ligands: POP.3, ATP.5 No protein-ligand interaction detected (PLIP) MG.2: 5 residues within 4Å: Chain A: D.253, D.351 Ligands: POP.3, AMP.4, ATP.5 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.253, A:D.351, H2O.7

1 x POP: PYROPHOSPHATE 2-(Non-covalent)

POP.3: 13 residues within 4Å: Chain A: S.249, G.251, I.252, D.253, S.254, G.347, D.351, K.423, K.443 Ligands: MG.1, MG.2, AMP.4, ATP.5 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:S.249, A:G.251, A:D.253, A:D.253, A:S.254, A:G.347 Water bridges: A:I.252, A:I.252, A:D.351 Salt bridges: A:K.423, A:K.443, A:K.443

1 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.4: 15 residues within 4Å: Chain A: V.247, L.248, S.249, S.254, V.271, S.272, M.273, Y.326, L.330, L.333, G.347, Y.348 Ligands: MG.2, POP.3, ATP.5 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:M.273, A:Y.326, A:G.347, A:G.347, A:D.351, A:D.351 Water bridges: A:G.349, A:G.349, A:G.349

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.5: 23 residues within 4Å: Chain A: V.247, L.248, S.249, G.251, I.252, D.253, S.254, V.271, S.272, M.273, Y.326, L.330, L.333, T.346, G.347, Y.348, D.351, K.423, K.443 Ligands: MG.1, MG.2, POP.3, AMP.4 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:S.249, A:G.251, A:I.252, A:D.253, A:S.254, A:M.273, A:M.273, A:G.347, A:G.347, A:G.347 Water bridges: A:D.351, A:D.351, A:K.443 Salt bridges: A:K.423, A:K.443, A:K.443, A:K.443

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Miller, M.T. et al., The catalytic cycle of beta -lactam synthetase observed by x-ray crystallographic snapshots. Proc.Natl.Acad.Sci.USA (2002)

Release Date

2002-10-23

Peptides

BETA-LACTAM SYNTHETASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

BETA-LACTAM SYNTHETASE

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