- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 6 x MG: MAGNESIUM ION(Non-covalent)
- 4 x TPP: THIAMINE DIPHOSPHATE(Non-covalent)
TPP.2: 26 residues within 4Å:- Chain A: E.375, S.376, T.377, S.378, G.401, G.402, L.403, G.427, D.428, G.429, S.430, Y.433, N.455, T.457, Y.458, G.459, A.460, L.461
- Chain B: N.23, P.24, G.25, E.47, H.70, N.77
- Ligands: MG.1, RMN.3
18 PLIP interactions:18 interactions with chain A- Hydrophobic interactions: A:Y.433, A:L.461
- Hydrogen bonds: A:T.377, A:S.378, A:S.378, A:G.401, A:L.403, A:G.427, A:G.429, A:S.430, A:S.430, A:N.455, A:G.459, A:A.460
- Water bridges: A:S.376, A:S.378, A:D.428, A:N.455
TPP.6: 26 residues within 4Å:- Chain A: N.23, P.24, G.25, E.47, H.70, N.77
- Chain B: E.375, S.376, T.377, S.378, G.401, G.402, L.403, G.427, D.428, G.429, S.430, Y.433, N.455, T.457, Y.458, G.459, A.460, L.461
- Ligands: MG.4, RMN.7
19 PLIP interactions:18 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:Y.433, B:L.461
- Hydrogen bonds: B:T.377, B:T.377, B:S.378, B:S.378, B:G.401, B:L.403, B:G.427, B:G.429, B:S.430, B:S.430, B:N.455, B:N.455, B:G.459, B:A.460
- Water bridges: B:D.428, B:N.455, A:E.47
TPP.9: 26 residues within 4Å:- Chain C: E.375, S.376, T.377, S.378, G.401, G.402, L.403, G.427, D.428, G.429, S.430, Y.433, N.455, T.457, Y.458, G.459, A.460, L.461
- Chain D: N.23, P.24, G.25, E.47, H.70, N.77
- Ligands: MG.8, RMN.10
18 PLIP interactions:18 interactions with chain C- Hydrophobic interactions: C:Y.433, C:L.461
- Hydrogen bonds: C:T.377, C:T.377, C:S.378, C:S.378, C:G.401, C:L.403, C:G.427, C:G.429, C:S.430, C:Y.433, C:N.455, C:N.455, C:G.459, C:A.460
- Water bridges: C:D.428, C:N.455
TPP.13: 26 residues within 4Å:- Chain C: N.23, P.24, G.25, E.47, H.70, N.77
- Chain D: E.375, S.376, T.377, S.378, G.401, G.402, L.403, G.427, D.428, G.429, S.430, Y.433, N.455, T.457, Y.458, G.459, A.460, L.461
- Ligands: MG.11, RMN.14
18 PLIP interactions:18 interactions with chain D- Hydrophobic interactions: D:Y.433, D:L.461
- Hydrogen bonds: D:T.377, D:T.377, D:S.378, D:S.378, D:G.401, D:L.403, D:G.427, D:G.429, D:S.430, D:Y.433, D:N.455, D:T.457, D:G.459, D:A.460
- Water bridges: D:D.428, D:N.455
- 4 x RMN: (R)-MANDELIC ACID(Non-covalent)
RMN.3: 10 residues within 4Å:- Chain A: H.281, T.377, F.397, G.401, L.461
- Chain B: G.25, S.26, H.70, L.110
- Ligands: TPP.2
6 PLIP interactions:2 interactions with chain B, 4 interactions with chain A- Hydrogen bonds: B:S.26, A:G.401
- Salt bridges: B:H.70, A:H.281
- Hydrophobic interactions: A:T.377, A:F.397
RMN.7: 11 residues within 4Å:- Chain A: G.25, S.26, H.70, L.110
- Chain B: H.281, T.377, F.397, G.401, L.461, F.464
- Ligands: TPP.6
6 PLIP interactions:2 interactions with chain A, 4 interactions with chain B- Hydrogen bonds: A:S.26, B:G.401
- Salt bridges: A:H.70, B:H.281
- Hydrophobic interactions: B:T.377, B:F.397
RMN.10: 10 residues within 4Å:- Chain C: H.281, T.377, F.397, G.401, L.461
- Chain D: G.25, S.26, H.70, L.110
- Ligands: TPP.9
6 PLIP interactions:4 interactions with chain C, 2 interactions with chain D- Hydrophobic interactions: C:T.377, C:F.397
- Hydrogen bonds: C:G.401, D:S.26
- Salt bridges: C:H.281, D:H.70
RMN.14: 10 residues within 4Å:- Chain C: G.25, S.26, H.70, L.110
- Chain D: H.281, T.377, F.397, G.401, L.461
- Ligands: TPP.13
6 PLIP interactions:4 interactions with chain D, 2 interactions with chain C- Hydrophobic interactions: D:T.377, D:F.397
- Hydrogen bonds: D:G.401, C:S.26
- Salt bridges: D:H.281, C:H.70
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- POLOVNIKOVA, E.S. et al., Structural and Kinetic Analysis of Catalysis by a ThiaminDiphosphate-Dependent Enzyme, Benzoylformate Decarboxylase. Biochemistry (2003)
- Release Date
- 2003-02-25
- Peptides
- BENZOYLFORMATE DECARBOXYLASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
MB
NC
OD
P
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 6 x MG: MAGNESIUM ION(Non-covalent)
- 4 x TPP: THIAMINE DIPHOSPHATE(Non-covalent)
- 4 x RMN: (R)-MANDELIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- POLOVNIKOVA, E.S. et al., Structural and Kinetic Analysis of Catalysis by a ThiaminDiphosphate-Dependent Enzyme, Benzoylformate Decarboxylase. Biochemistry (2003)
- Release Date
- 2003-02-25
- Peptides
- BENZOYLFORMATE DECARBOXYLASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
MB
NC
OD
P