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SMTL ID : 1mg0.2
(1 other biounit)
Horse Liver Alcohol Dehydrogenase Complexed With NAD+ and 2,3-Difluorobenzyl Alcohol
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.80 Å
Oligo State
homo-dimer
Ligands
4 x
ZN
:
ZINC ION
(Non-covalent)
ZN.1:
6 residues within 4Å:
Chain A:
C.46
,
S.48
,
H.67
,
C.174
Ligands:
NAD.3
,
DFB.4
3
PLIP interactions
:
3 interactions with chain A
Metal complexes:
A:C.46
,
A:H.67
,
A:C.174
ZN.2:
6 residues within 4Å:
Chain A:
C.97
,
G.98
,
C.100
,
C.103
,
C.111
,
L.112
4
PLIP interactions
:
4 interactions with chain A
Metal complexes:
A:C.97
,
A:C.100
,
A:C.103
,
A:C.111
ZN.5:
6 residues within 4Å:
Chain B:
C.46
,
S.48
,
H.67
,
C.174
Ligands:
NAD.7
,
DFB.8
3
PLIP interactions
:
3 interactions with chain B
Metal complexes:
B:C.46
,
B:H.67
,
B:C.174
ZN.6:
5 residues within 4Å:
Chain B:
C.97
,
C.100
,
C.103
,
C.111
,
L.112
4
PLIP interactions
:
4 interactions with chain B
Metal complexes:
B:C.97
,
B:C.100
,
B:C.103
,
B:C.111
2 x
NAD
:
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
(Non-covalent)
NAD.3:
30 residues within 4Å:
Chain A:
C.46
,
R.47
,
S.48
,
H.51
,
C.174
,
T.178
,
G.199
,
L.200
,
G.201
,
G.202
,
V.203
,
V.222
,
D.223
,
I.224
,
N.225
,
K.228
,
V.268
,
I.269
,
G.270
,
R.271
,
V.292
,
G.293
,
V.294
,
A.317
,
I.318
,
F.319
,
L.362
,
R.369
Ligands:
ZN.1
,
DFB.4
23
PLIP interactions
:
23 interactions with chain A
Hydrophobic interactions:
A:T.178
,
A:V.203
Hydrogen bonds:
A:R.47
,
A:H.51
,
A:L.200
,
A:G.201
,
A:G.202
,
A:V.203
,
A:I.224
,
A:I.269
,
A:R.271
,
A:V.292
,
A:V.294
,
A:F.319
Water bridges:
A:G.204
,
A:K.228
,
A:R.271
,
A:G.320
,
A:S.367
,
A:R.369
,
A:R.369
Salt bridges:
A:R.47
,
A:R.369
NAD.7:
29 residues within 4Å:
Chain B:
C.46
,
R.47
,
S.48
,
H.51
,
C.174
,
T.178
,
G.199
,
L.200
,
G.201
,
G.202
,
V.203
,
D.223
,
I.224
,
N.225
,
K.228
,
V.268
,
I.269
,
G.270
,
R.271
,
V.292
,
G.293
,
V.294
,
A.317
,
I.318
,
F.319
,
L.362
,
R.369
Ligands:
ZN.5
,
DFB.8
24
PLIP interactions
:
24 interactions with chain B
Hydrophobic interactions:
B:T.178
,
B:V.203
Hydrogen bonds:
B:R.47
,
B:H.51
,
B:L.200
,
B:G.201
,
B:G.202
,
B:V.203
,
B:I.224
,
B:I.269
,
B:R.271
,
B:V.292
,
B:V.294
,
B:F.319
Water bridges:
B:R.47
,
B:R.47
,
B:G.204
,
B:R.271
,
B:G.320
,
B:S.367
,
B:R.369
,
B:R.369
Salt bridges:
B:R.47
,
B:R.369
2 x
DFB
:
2,3-DIFLUOROBENZYL ALCOHOL
(Non-covalent)
DFB.4:
12 residues within 4Å:
Chain A:
C.46
,
S.48
,
L.57
,
H.67
,
F.93
,
L.116
,
L.141
,
C.174
,
V.294
Chain B:
L.309
Ligands:
ZN.1
,
NAD.3
5
PLIP interactions
:
5 interactions with chain A
Hydrophobic interactions:
A:L.57
,
A:F.93
,
A:L.116
,
A:L.141
Hydrogen bonds:
A:S.48
DFB.8:
12 residues within 4Å:
Chain B:
C.46
,
S.48
,
L.57
,
H.67
,
F.93
,
L.116
,
L.141
,
C.174
,
V.294
,
I.318
Ligands:
ZN.5
,
NAD.7
5
PLIP interactions
:
5 interactions with chain B
Hydrophobic interactions:
B:F.93
,
B:L.116
,
B:V.294
,
B:I.318
Hydrogen bonds:
B:S.48
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Rubach, J.K. et al., Mobility of Fluorobenzyl Alcohols Bound to Liver Alcohol Dehydrogenases as Determined by NMR and X-ray Crystallographic Studies. Biochemistry (2002)
Release Date
2002-11-13
Peptides
Alcohol Dehydrogenase E chain:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
C
B
D
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Alcohol Dehydrogenase E chain
Toggle Identical (AB)
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