SMTL ID : 1mhl.3 (2 other biounits)

CRYSTAL STRUCTURE OF HUMAN MYELOPEROXIDASE ISOFORM C CRYSTALLIZED IN SPACE GROUP P2(1) AT PH 5.5 AND 20 DEG C

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG- BMA- MAN- MAN- FUC: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-FUC.1: 4 residues within 4Å: Chain B: N.205, S.207, V.208, R.392 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:V.208, B:R.392 Water bridges: B:S.207

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 6 residues within 4Å: Chain B: N.77, N.80, L.84, A.86, V.87, Q.89 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:N.80, B:V.87, B:Q.89, B:Q.89 Water bridges: B:N.77 NAG.3: 5 residues within 4Å: Chain B: N.113, S.115, A.116, W.257, L.261 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.113

1 x CA: CALCIUM ION(Non-covalent)

CA.4: 5 residues within 4Å: Chain A: D.98 Chain B: T.56, F.58, D.60, S.62 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Metal complexes: B:T.56, B:F.58, B:D.60, B:S.62, A:D.98

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 5 residues within 4Å: Chain A: R.33, W.34 Chain B: N.214, V.215, W.324 Ligand excluded by PLIP

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)

HEM.6: 21 residues within 4Å: Chain A: M.89, G.92, Q.93, D.96, D.100, F.101, T.102 Chain B: R.127, E.130, M.131, T.217, F.220, R.221, G.223, H.224, I.227, F.253, L.294, F.295, L.305, R.312 24 PLIP interactions: 19 interactions with chain B, 5 interactions with chain A, Hydrophobic interactions: B:E.130, B:M.131, B:R.221, B:I.227, B:F.253, B:L.294, B:F.295, B:L.305, B:L.305, A:Q.93, A:Q.93 Water bridges: B:R.127, B:R.127, B:R.221, B:R.221, B:R.221, B:R.221 Salt bridges: B:R.127, B:R.221, B:R.312 Metal complexes: B:H.224 Hydrogen bonds: A:D.100, A:T.102, A:T.102

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fenna, R. et al., Structure of the green heme in myeloperoxidase. Arch.Biochem.Biophys. (1995)

Release Date

1996-01-06

Peptides

MYELOPEROXIDASE: A
MYELOPEROXIDASE: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

MYELOPEROXIDASE

MYELOPEROXIDASE

Related Entries With Identical Sequence